RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 C3orf85A0A1B0GTC6 90 aa11.71□□□□□ -0.54
USP39-220ENST00000613444 C17orf98A8MV24 154 aa11.71□□□□□ -0.54
USP39-220ENST00000613444 IGHV2-5P01817 119 aa11.71□□□□□ -0.54
USP39-220ENST00000613444 ANXA3P12429 323 aa11.71□□□□□ -0.54
USP39-220ENST00000613444 PDLIM4P50479 330 aa11.71□□□□□ -0.54
USP39-220ENST00000613444 KCTD9Q7L273 389 aa11.71□□□□□ -0.54
USP39-220ENST00000613444 OR5M8Q8NGP6 311 aa11.71□□□□□ -0.54
USP39-220ENST00000613444 DMRTB1Q96MA1 342 aa11.71□□□□□ -0.54
USP39-220ENST00000613444 KCNS2Q9ULS6 477 aa11.71□□□□□ -0.54
USP39-220ENST00000613444 KCNIP3Q9Y2W7 256 aa11.71□□□□□ -0.54
USP39-220ENST00000613444 ABCA2Q9BZC7 2435 aa11.71□□□□□ -0.54
USP39-220ENST00000613444 RGS11O94810 467 aa11.7□□□□□ -0.54
USP39-220ENST00000613444 F2RP25116 425 aa11.7□□□□□ -0.54
USP39-220ENST00000613444 NFYBP25208 207 aa11.7□□□□□ -0.54
USP39-220ENST00000613444 ATP5J2P56134 94 aa11.7□□□□□ -0.54
USP39-220ENST00000613444 LRTM2Q8N967 370 aa11.7□□□□□ -0.54
USP39-220ENST00000613444 COQ8AQ8NI60 647 aa11.7□□□□□ -0.54
USP39-220ENST00000613444 LHFPL5Q8TAF8 219 aa11.7□□□□□ -0.54
USP39-220ENST00000613444 SSBP3Q9BWW4 388 aaPredicted RBP11.7□□□□□ -0.54
USP39-220ENST00000613444 SUCNR1Q9BXA5 334 aa11.7□□□□□ -0.54
USP39-220ENST00000613444 SDHAF2Q9NX18 166 aa11.7□□□□□ -0.54
USP39-220ENST00000613444 MAP1AP78559 2803 aaPredicted RBP11.7□□□□□ -0.54
USP39-220ENST00000613444 KIAA1324LA8MWY0 1029 aaPredicted RBP11.69□□□□□ -0.54
USP39-220ENST00000613444 VWC2LB2RUY7 222 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 G3V3Q6 166 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 SMLR1H3BR10 107 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 CCSO14618 274 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 LMO4P61968 165 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 GNB2P62879 340 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 LIAT1Q6ZQX7 453 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 ZBTB34Q8NCN2 500 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 ABHD14AQ9BUJ0 271 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 GSX2Q9BZM3 304 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 TMEM222Q9H0R3 208 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 WNK2Q9Y3S1 2297 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 A0A1W2PPE3 182 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 ADAP1O75689 374 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 GIPP09681 153 aaPredicted RBP11.69□□□□□ -0.54
USP39-220ENST00000613444 SSTR2P30874 369 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 SRSF4Q08170 494 aaKnown RBP11.69□□□□□ -0.54
USP39-220ENST00000613444 C1orf229Q6ZS94 237 aaPredicted RBP11.69□□□□□ -0.54
USP39-220ENST00000613444 ODF3L1Q8IXM7 274 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 CLDND2Q8NHS1 167 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 C10orf105Q8TEF2 133 aa11.69□□□□□ -0.54
USP39-220ENST00000613444 BARX1Q9HBU1 254 aaPredicted RBP11.69□□□□□ -0.54
USP39-220ENST00000613444 A0A087X0M5 115 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 PPIAL4CA0A0B4J2A2 164 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 A0A1B0GX30 115 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 H0Y980 276 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 PPIAL4GP0DN37 164 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 IGHV1-8P0DP01 117 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 UCP1P25874 307 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 ZFP36P26651 326 aaKnown RBP11.68□□□□□ -0.54
USP39-220ENST00000613444 C11orf91Q3C1V1 193 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 C11orf88Q6PI97 169 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 SLC25A48Q6ZT89 311 aaKnown RBP11.68□□□□□ -0.54
USP39-220ENST00000613444 PERPQ96FX8 193 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 C18orf12Q96KH6 178 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 CHIAQ9BZP6 476 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 RAB18Q9NP72 206 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 GAB2Q9UQC2 676 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 MPTX1A8MV57 137 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 RPL30P62888 115 aaKnown RBP11.68□□□□□ -0.54
USP39-220ENST00000613444 ESCO2Q56NI9 601 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 Q5BKY6 102 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 HIST2H2BCQ6DN03 193 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 OR51H1Q8NH63 302 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 FAM168AQ92567 244 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 MARVELD3Q96A59 401 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 TMEM56Q96MV1 263 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 ZNF251Q9BRH9 671 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 ZNRD1Q9P1U0 126 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 TMEM56-RWDD3S4R434 201 aa11.68□□□□□ -0.54
USP39-220ENST00000613444 NDUFS8O00217 210 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 CDS2O95674 445 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 S100GP29377 79 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 RAB7AP51149 207 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 BRWD1-AS2P59051 145 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 PAX2Q02962 417 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 Q3ZCU0 254 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 ZNF596Q8TC21 504 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 LOC105371242A0A075B767 164 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 C1QBP02746 253 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 RBP4P02753 201 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 GPR12P47775 334 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 GNG10P50151 68 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 LINC00205P59089 165 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 RAP2BP61225 183 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 ZNF585BQ52M93 769 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 RPL39P5Q59GN2 51 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 BTNL3Q6UXE8 466 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 C8orf31Q8N9H6 132 aa11.67□□□□□ -0.54
USP39-220ENST00000613444 LINC00473A8K010 186 aa11.66□□□□□ -0.54
USP39-220ENST00000613444 A8MXK9 166 aa11.66□□□□□ -0.54
USP39-220ENST00000613444 B3GALNT1O75752 331 aa11.66□□□□□ -0.54
USP39-220ENST00000613444 LIPFP07098 398 aa11.66□□□□□ -0.54
USP39-220ENST00000613444 HOXB5P09067 269 aa11.66□□□□□ -0.54
USP39-220ENST00000613444 FASNP49327 2511 aaKnown RBP11.66□□□□□ -0.54
USP39-220ENST00000613444 DLX1P56177 255 aa11.66□□□□□ -0.54
USP39-220ENST00000613444 LYZL2Q7Z4W2 148 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms