RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 RBM14Q96PK6 669 aaKnown RBP8.87□□□□□ -0.99
LIG1-211ENST00000596457 GINS4Q9BRT9 223 aa8.87□□□□□ -0.99
LIG1-211ENST00000596457 PRSS22Q9GZN4 317 aa8.87□□□□□ -0.99
LIG1-211ENST00000596457 C11orf54Q9H0W9 315 aaPredicted RBP8.87□□□□□ -0.99
LIG1-211ENST00000596457 C16orf95Q9H693 158 aa8.87□□□□□ -0.99
LIG1-211ENST00000596457 RDH8Q9NYR8 311 aa8.87□□□□□ -0.99
LIG1-211ENST00000596457 RBM7Q9Y580 266 aaKnown RBP8.87□□□□□ -0.99
LIG1-211ENST00000596457 MMP24Q9Y5R2 645 aa8.87□□□□□ -0.99
LIG1-211ENST00000596457 SAA2-SAA4A0A096LPE2 208 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 CCDC160A6NGH7 325 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 FAM90A9PA6NNJ1 464 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 NCBP2LA6PVI3 153 aaKnown RBP8.86□□□□□ -0.99
LIG1-211ENST00000596457 SSX5O60225 188 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 HPGDSO60760 199 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 PEX14O75381 377 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 OR2F2O95006 317 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 EIF4EP06730 217 aaKnown RBP8.86□□□□□ -0.99
LIG1-211ENST00000596457 SAA2P0DJI9 122 aaPredicted RBP8.86□□□□□ -0.99
LIG1-211ENST00000596457 DTYMKP23919 212 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 PITPNAQ00169 270 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 SPCS2Q15005 226 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 HERPUD1Q15011 391 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 ABCA11PQ4W5N1 156 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 RPL39P5Q59GN2 51 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 HIST2H2BDQ6DRA6 164 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 MZT2AQ6P582 158 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 Q6ZS46 218 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 THNSL2Q86YJ6 484 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 ODF3L1Q8IXM7 274 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 EDARADDQ8WWZ3 215 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 KCTD12Q96CX2 325 aaKnown RBP8.86□□□□□ -0.99
LIG1-211ENST00000596457 AKR1E2Q96JD6 320 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 S1PR3Q99500 378 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 MRPL20Q9BYC9 149 aaKnown RBP8.86□□□□□ -0.99
LIG1-211ENST00000596457 ABCG5Q9H222 651 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 ZNF702PQ9H963 129 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.86□□□□□ -0.99
LIG1-211ENST00000596457 PIPOXQ9P0Z9 390 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 ZNF221Q9UK13 617 aa8.86□□□□□ -0.99
LIG1-211ENST00000596457 MRPS7Q9Y2R9 242 aaKnown RBP8.86□□□□□ -0.99
LIG1-211ENST00000596457 A0A0A6YYH2 397 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 SMIM31A0A1B0GVY4 71 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 A6NJ64 397 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 RAB29O14966 203 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 TXNL1O43396 289 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 XRCC3O43542 346 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 LANCL1O43813 399 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 OR8U9P0C7N5 309 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 ZNF182P17025 639 aaPredicted RBP8.85□□□□□ -0.99
LIG1-211ENST00000596457 CD1BP29016 333 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 GPR12P47775 334 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 TAS2R20P59543 309 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 TMEM95Q3KNT9 176 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 LY6G6FQ5SQ64 297 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 TMEM69Q5SWH9 247 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 GLDNQ6ZMI3 551 aaPredicted RBP8.85□□□□□ -0.99
LIG1-211ENST00000596457 C16orf82Q7Z2V1 217 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 GVQW1Q8N7I0 195 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 OR2T10Q8NGZ9 312 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 OR8U1Q8NH10 309 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 ACOT12Q8WYK0 555 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 EAF1Q96JC9 268 aaPredicted RBP8.85□□□□□ -0.99
LIG1-211ENST00000596457 IFI27L2Q9H2X8 130 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 RANBP3Q9H6Z4 567 aaPredicted RBP8.85□□□□□ -0.99
LIG1-211ENST00000596457 AUNIPQ9H7T9 357 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 MOB4Q9Y3A3 225 aa8.85□□□□□ -0.99
LIG1-211ENST00000596457 TRBV6-7A0A0A0MS04 114 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 MOSP00540 346 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 ELK1P19419 428 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 NFYAP23511 347 aaPredicted RBP8.84□□□□□ -0.99
LIG1-211ENST00000596457 SOX6P35712 828 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 VDAC2P45880 294 aaPredicted RBP8.84□□□□□ -0.99
LIG1-211ENST00000596457 ZNF137PP52743 207 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 TMBIM6P55061 237 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 ARPC4P59998 168 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 KRTAP10-3P60369 221 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 LSAMPQ13449 338 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 SRSF7Q16629 238 aaKnown RBP eCLIP8.84□□□□□ -0.99
LIG1-211ENST00000596457 ZNF833PQ6ZTB9 187 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 KLHDC1Q8N7A1 406 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 C11orf44Q8N8P7 122 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 DRAXINQ8NBI3 349 aaPredicted RBP8.84□□□□□ -0.99
LIG1-211ENST00000596457 BEST4Q8NFU0 473 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 RAB2BQ8WUD1 216 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 WFDC12Q8WWY7 111 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 AP3S1Q92572 193 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 NABP2Q9BQ15 211 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 CABLES2Q9BTV7 478 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 IFT46Q9NQC8 304 aa8.84□□□□□ -0.99
LIG1-211ENST00000596457 H7C2Y5 167 aa8.83□□□□□ -1
LIG1-211ENST00000596457 ITGB1BP1O14713 200 aa8.83□□□□□ -1
LIG1-211ENST00000596457 RGS5O15539 181 aa8.83□□□□□ -1
LIG1-211ENST00000596457 PROK1P58294 105 aa8.83□□□□□ -1
LIG1-211ENST00000596457 RNASE12Q5GAN4 147 aaKnown RBP8.83□□□□□ -1
LIG1-211ENST00000596457 CNIH2Q6PI25 160 aa8.83□□□□□ -1
LIG1-211ENST00000596457 SNX29P2Q8IUI4 249 aa8.83□□□□□ -1
LIG1-211ENST00000596457 OR2D2Q9H210 308 aa8.83□□□□□ -1
LIG1-211ENST00000596457 ANXA10Q9UJ72 324 aa8.83□□□□□ -1
LIG1-211ENST00000596457 M0QZK8 103 aa8.82□□□□□ -1
LIG1-211ENST00000596457 M0R1X1 148 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms