RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 UTF1Q5T230 341 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 OR10K2Q6IF99 312 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 C11orf87Q6NUJ2 197 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 Q6ZS49 121 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 SPARTQ8N0X7 666 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 STPG2Q8N412 459 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 TCTEX1D1Q8N7M0 179 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 NPBQ8NG41 125 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 OR10V1Q8NGI7 309 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 IL1F10Q8WWZ1 152 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 RAB3CQ96E17 227 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 CMSS1Q9BQ75 279 aaKnown RBP8.3□□□□□ -1.08
LIG3-212ENST00000590181 ZNF251Q9BRH9 671 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 Q9N2K0 584 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 PLSCR3Q9NRY6 295 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 KIAA1456Q9P272 454 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 STUB1Q9UNE7 303 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 SSR3Q9UNL2 185 aa8.3□□□□□ -1.08
LIG3-212ENST00000590181 NOTOA8MTQ0 251 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 SOCS1O15524 211 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 HLA-DRB1P01911 266 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 CTXN2P0C2S0 81 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 PPP1CCP36873 323 aaKnown RBP8.29□□□□□ -1.08
LIG3-212ENST00000590181 CEACAM6P40199 344 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 MYCNOSP40205 109 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 MAP2K4P45985 399 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 CDX1P47902 265 aaPredicted RBP8.29□□□□□ -1.08
LIG3-212ENST00000590181 VEGFCP49767 419 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 TIMM50Q3ZCQ8 353 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 CXorf66Q5JRM2 361 aaPredicted RBP8.29□□□□□ -1.08
LIG3-212ENST00000590181 CROCCP3Q8IVE0 287 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 OR52L2PQ8NGH6 319 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 OR10R2Q8NGX6 335 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 GFI1Q99684 422 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 NABP2Q9BQ15 211 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 PECRQ9BY49 303 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 DCSTAMPQ9H295 470 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 AK3Q9UIJ7 227 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 ZNF221Q9UK13 617 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 RNF150Q9ULK6 438 aa8.29□□□□□ -1.08
LIG3-212ENST00000590181 A0A0A6YYH2 397 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 TMEM272A0A1B0GTI8 110 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 A6NJ64 397 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 ARPC1BO15143 372 aaKnown RBP8.28□□□□□ -1.08
LIG3-212ENST00000590181 NBR2O15453 112 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 ST8SIA5O15466 376 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 SLC22A5O76082 557 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 SPDEFO95238 335 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 IGHG4P01861 327 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 VDAC1P21796 283 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 TALDO1P37837 337 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 REG1BP48304 166 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 RPL23AP62750 156 aaKnown RBP8.28□□□□□ -1.08
LIG3-212ENST00000590181 HLA-DRB3P79483 266 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 TMEM267Q0VDI3 215 aaPredicted RBP8.28□□□□□ -1.08
LIG3-212ENST00000590181 MMDQ15546 238 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 KCTD21Q4G0X4 260 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 TCTEX1D4Q5JR98 221 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 ZNF660Q6AZW8 331 aaPredicted RBP8.28□□□□□ -1.08
LIG3-212ENST00000590181 LIN54Q6MZP7 749 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 ZNF773Q6PK81 442 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 ODF3L1Q8IXM7 274 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 OR5AN1Q8NGI8 311 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 OR10J5Q8NHC4 309 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 ARHGAP5-AS1Q96IT6 56 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 KCTD7Q96MP8 289 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 AGMATQ9BSE5 352 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 NICN1Q9BSH3 213 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 IFI27L2Q9H2X8 130 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 VCX3AQ9NNX9 186 aa8.28□□□□□ -1.08
LIG3-212ENST00000590181 DYNC2H1Q8NCM8 4307 aaKnown RBP8.27□□□□□ -1.08
LIG3-212ENST00000590181 SAA2-SAA4A0A096LPE2 208 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 A0A0A6YYD4 124 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 SLC31A2O15432 143 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 NDUFA3O95167 84 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 SAA2P0DJI9 122 aaPredicted RBP8.27□□□□□ -1.09
LIG3-212ENST00000590181 RRASP10301 218 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 HIST1H1DP16402 221 aaKnown RBP8.27□□□□□ -1.09
LIG3-212ENST00000590181 DTYMKP23919 212 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 LGALS7P47929 136 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 ACTBP60709 375 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 CBX3Q13185 183 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 TMEM95Q3KNT9 176 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 PYHIN1Q6K0P9 492 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 TMEM65Q6PI78 240 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 ZNF695Q8IW36 515 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 OR8U1Q8NH10 309 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 SETD6Q8TBK2 473 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 DPF1Q92782 380 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 ADTRPQ96IZ2 230 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 TSNAXQ99598 290 aaKnown RBP8.27□□□□□ -1.09
LIG3-212ENST00000590181 TXNL4BQ9NX01 149 aaKnown RBP8.27□□□□□ -1.09
LIG3-212ENST00000590181 ZNF107Q9UII5 783 aaPredicted RBP8.27□□□□□ -1.09
LIG3-212ENST00000590181 WASHC3Q9Y3C0 194 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 ETV7Q9Y603 341 aa8.27□□□□□ -1.09
LIG3-212ENST00000590181 IGHV3-72A0A0B4J1Y9 119 aa8.26□□□□□ -1.09
LIG3-212ENST00000590181 RAB27BO00194 218 aa8.26□□□□□ -1.09
LIG3-212ENST00000590181 FABP7O15540 132 aa8.26□□□□□ -1.09
LIG3-212ENST00000590181 APOA2P02652 100 aa8.26□□□□□ -1.09
LIG3-212ENST00000590181 GSTP1P09211 210 aaKnown RBP8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms