RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 ENKURQ8TC29 256 aa4.35□□□□□ -1.71
LIG3-210ENST00000588109 DEDD2Q8WXF8 326 aa4.35□□□□□ -1.71
LIG3-210ENST00000588109 PRRT1Q99946 306 aa4.35□□□□□ -1.71
LIG3-210ENST00000588109 C7orf50Q9BRJ6 194 aaKnown RBP4.35□□□□□ -1.71
LIG3-210ENST00000588109 ZNF2Q9BSG1 426 aaPredicted RBP4.35□□□□□ -1.71
LIG3-210ENST00000588109 PCGF1Q9BSM1 259 aa4.35□□□□□ -1.71
LIG3-210ENST00000588109 CABLES2Q9BTV7 478 aa4.35□□□□□ -1.71
LIG3-210ENST00000588109 SUCNR1Q9BXA5 334 aa4.35□□□□□ -1.71
LIG3-210ENST00000588109 C11orf54Q9H0W9 315 aaPredicted RBP4.35□□□□□ -1.71
LIG3-210ENST00000588109 DPAGT1Q9H3H5 408 aa4.35□□□□□ -1.71
LIG3-210ENST00000588109 MMP26Q9NRE1 261 aa4.35□□□□□ -1.71
LIG3-210ENST00000588109 RDH8Q9NYR8 311 aa4.35□□□□□ -1.71
LIG3-210ENST00000588109 OR1A1Q9P1Q5 309 aa4.35□□□□□ -1.71
LIG3-210ENST00000588109 SCP2D1Q9UJQ7 156 aa4.35□□□□□ -1.71
LIG3-210ENST00000588109 JPT1Q9UK76 154 aa4.35□□□□□ -1.71
LIG3-210ENST00000588109 TBC1D24Q9ULP9 559 aa4.35□□□□□ -1.71
LIG3-210ENST00000588109 RBM7Q9Y580 266 aaKnown RBP4.35□□□□□ -1.71
LIG3-210ENST00000588109 UNC79Q9P2D8 2635 aa4.35□□□□□ -1.71
LIG3-210ENST00000588109 APCP25054 2843 aa4.35□□□□□ -1.71
LIG3-210ENST00000588109 TACC2O95359 2948 aa4.35□□□□□ -1.71
LIG3-210ENST00000588109 TRBV6-7A0A0A0MS04 114 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 IGKV1-6A0A0C4DH72 117 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 C17orf98A8MV24 154 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 NPIPB11E5RHQ5 1161 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 M0R1W7 72 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 F2RL2O00254 374 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 PLA2G10O15496 165 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 MMP23AO75900 390 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 TGFAP01135 160 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 PPYP01298 95 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 IGHV3-7P01780 117 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 RBP4P02753 201 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 CGB3P0DN86 165 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 CGB7P0DN87 165 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 IGHV1-8P0DP01 117 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 PGAM2P15259 253 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 AADACP22760 399 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 COX7A1P24310 79 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 PPP1CCP36873 323 aaKnown RBP4.34□□□□□ -1.71
LIG3-210ENST00000588109 GNG10P50151 68 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 LUMP51884 338 aaPredicted RBP4.34□□□□□ -1.71
LIG3-210ENST00000588109 DLX6P56179 175 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 PRB3Q04118 309 aaPredicted RBP4.34□□□□□ -1.71
LIG3-210ENST00000588109 GNMTQ14749 295 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 TMEM249Q2WGJ8 235 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 CYB5R2Q6BCY4 276 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 FAHD2BQ6P2I3 314 aaPredicted RBP4.34□□□□□ -1.71
LIG3-210ENST00000588109 VMO1Q7Z5L0 202 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 H1FOOQ8IZA3 346 aaPredicted RBP4.34□□□□□ -1.71
LIG3-210ENST00000588109 KIR3DL3Q8N743 410 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 OR2AK2Q8NG84 335 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 OR52M1Q8NGK5 317 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 OR13D1Q8NGV5 346 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 ZFAND2BQ8WV99 257 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 LEAP2Q969E1 77 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 TOMM40LQ969M1 308 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 TMEM186Q96B77 213 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 FAHD2AQ96GK7 314 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 GPHA2Q96T91 129 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 SLC6A7Q99884 636 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 TMEM133Q9H2Q1 129 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 METTL8Q9H825 291 aaKnown RBP4.34□□□□□ -1.71
LIG3-210ENST00000588109 SIRT7Q9NRC8 400 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 HIF1ANQ9NWT6 349 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 KCNS2Q9ULS6 477 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 INSIG2Q9Y5U4 225 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 KPTNQ9Y664 436 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 SESN1Q9Y6P5 492 aa4.34□□□□□ -1.71
LIG3-210ENST00000588109 A0A096LNT2 108 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 A0A1W2PPE3 182 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 OR5H14A6NHG9 310 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 HSD17B6O14756 317 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 YPEL1O60688 119 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 LY86O95711 162 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 PTTG1O95997 202 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 RLN1P04808 185 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 OR8U9P0C7N5 309 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 ZNF735P0CB33 412 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 IGHV4-31P0DP07 118 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 GATA3P23771 443 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 IL3RAP26951 378 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 GPR12P47775 334 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 RAB7AP51149 207 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 CCR6P51684 374 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 PRRX1P54821 245 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 LOXL3P58215 753 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 PAX2Q02962 417 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 RBMS2Q15434 407 aaKnown RBP4.33□□□□□ -1.72
LIG3-210ENST00000588109 TRIM16LQ309B1 348 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 ABCA11PQ4W5N1 156 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 MORN2Q502X0 79 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 NCR3LG1Q68D85 454 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 FAM53AQ6NSI3 398 aaPredicted RBP4.33□□□□□ -1.72
LIG3-210ENST00000588109 DHRS11Q6UWP2 260 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 NRARPQ7Z6K4 114 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 TMED4Q7Z7H5 227 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 PDZD9Q8IXQ8 264 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 LYG1Q8N1E2 194 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 ABHD12Q8N2K0 398 aa4.33□□□□□ -1.72
LIG3-210ENST00000588109 CIARTQ8N365 385 aaPredicted RBP4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms