RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 MLLT11Q13015 90 aaPredicted RBP15.99■□□□□ 0.15
SHMT1-209ENST00000582653 RPL39P5Q59GN2 51 aa15.99■□□□□ 0.15
SHMT1-209ENST00000582653 FAM89BQ8N5H3 189 aa15.99■□□□□ 0.15
SHMT1-209ENST00000582653 URM1Q9BTM9 101 aaKnown RBP15.99■□□□□ 0.15
SHMT1-209ENST00000582653 ISYNA1Q9NPH2 558 aa15.99■□□□□ 0.15
SHMT1-209ENST00000582653 G3V318 75 aa15.98■□□□□ 0.15
SHMT1-209ENST00000582653 PSMB8P28062 276 aa15.98■□□□□ 0.15
SHMT1-209ENST00000582653 TMEM50BP56557 158 aa15.98■□□□□ 0.15
SHMT1-209ENST00000582653 OR5M8Q8NGP6 311 aa15.98■□□□□ 0.15
SHMT1-209ENST00000582653 ABHD14BQ96IU4 210 aa15.98■□□□□ 0.15
SHMT1-209ENST00000582653 MGLLQ99685 303 aa15.98■□□□□ 0.15
SHMT1-209ENST00000582653 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.98■□□□□ 0.15
SHMT1-209ENST00000582653 FOXI3A8MTJ6 420 aaPredicted RBP15.97■□□□□ 0.15
SHMT1-209ENST00000582653 ATP6V0E1O15342 81 aa15.97■□□□□ 0.15
SHMT1-209ENST00000582653 NBR2O15453 112 aa15.97■□□□□ 0.15
SHMT1-209ENST00000582653 ARL6IP5O75915 188 aa15.97■□□□□ 0.15
SHMT1-209ENST00000582653 OR5H8P0DN80 308 aa15.97■□□□□ 0.15
SHMT1-209ENST00000582653 CALRP27797 417 aaKnown RBP15.97■□□□□ 0.15
SHMT1-209ENST00000582653 VEGFCP49767 419 aa15.97■□□□□ 0.15
SHMT1-209ENST00000582653 TRAM1Q15629 374 aa15.97■□□□□ 0.15
SHMT1-209ENST00000582653 RAB11BQ15907 218 aa15.97■□□□□ 0.15
SHMT1-209ENST00000582653 FAM131AQ6UXB0 335 aa15.97■□□□□ 0.15
SHMT1-209ENST00000582653 GLDNQ6ZMI3 551 aaPredicted RBP15.97■□□□□ 0.15
SHMT1-209ENST00000582653 PRSS48Q7RTY5 328 aa15.97■□□□□ 0.15
SHMT1-209ENST00000582653 KLK15Q9H2R5 256 aa15.97■□□□□ 0.15
SHMT1-209ENST00000582653 OR51J1Q9H342 316 aa15.97■□□□□ 0.15
SHMT1-209ENST00000582653 PARP11Q9NR21 331 aa15.97■□□□□ 0.15
SHMT1-209ENST00000582653 PIPOXQ9P0Z9 390 aa15.97■□□□□ 0.15
SHMT1-209ENST00000582653 OR1A1Q9P1Q5 309 aa15.97■□□□□ 0.15
SHMT1-209ENST00000582653 SLC23A1Q9UHI7 598 aa15.97■□□□□ 0.15
SHMT1-209ENST00000582653 IGHV7-81A0A0B4J1V7 117 aa15.96■□□□□ 0.15
SHMT1-209ENST00000582653 RAB29O14966 203 aa15.96■□□□□ 0.15
SHMT1-209ENST00000582653 HLA-DRB1P01911 266 aa15.96■□□□□ 0.15
SHMT1-209ENST00000582653 SCTP09683 121 aa15.96■□□□□ 0.15
SHMT1-209ENST00000582653 CT45A6P0DMU7 189 aa15.96■□□□□ 0.15
SHMT1-209ENST00000582653 CT45A5P0DMU8 189 aa15.96■□□□□ 0.15
SHMT1-209ENST00000582653 CT45A7P0DMV0 189 aa15.96■□□□□ 0.15
SHMT1-209ENST00000582653 PPIFP30405 207 aaKnown RBP15.96■□□□□ 0.15
SHMT1-209ENST00000582653 CEACAM6P40199 344 aa15.96■□□□□ 0.15
SHMT1-209ENST00000582653 PLA2G7Q13093 441 aa15.96■□□□□ 0.15
SHMT1-209ENST00000582653 C5orf64Q2M2E5 130 aa15.96■□□□□ 0.15
SHMT1-209ENST00000582653 C2orf76Q3KRA6 126 aa15.96■□□□□ 0.15
SHMT1-209ENST00000582653 C9orf66Q5T8R8 295 aa15.96■□□□□ 0.15
SHMT1-209ENST00000582653 LIN54Q6MZP7 749 aa15.96■□□□□ 0.15
SHMT1-209ENST00000582653 NPBQ8NG41 125 aa15.96■□□□□ 0.15
SHMT1-209ENST00000582653 C4orf3Q8WVX3 66 aa15.96■□□□□ 0.15
SHMT1-209ENST00000582653 ARHGAP5-AS1Q96IT6 56 aa15.96■□□□□ 0.15
SHMT1-209ENST00000582653 RIMS4Q9H426 269 aaPredicted RBP15.96■□□□□ 0.15
SHMT1-209ENST00000582653 TRBV6-6A0A0A6YYG2 114 aa15.95■□□□□ 0.14
SHMT1-209ENST00000582653 PSMA1P25786 263 aaKnown RBP15.95■□□□□ 0.14
SHMT1-209ENST00000582653 LUMP51884 338 aaPredicted RBP15.95■□□□□ 0.14
SHMT1-209ENST00000582653 HLA-DRB3P79483 266 aa15.95■□□□□ 0.14
SHMT1-209ENST00000582653 KIAA0141Q14154 515 aaPredicted RBP15.95■□□□□ 0.14
SHMT1-209ENST00000582653 IZUMO2Q6UXV1 221 aa15.95■□□□□ 0.14
SHMT1-209ENST00000582653 MOB1BQ7L9L4 216 aa15.95■□□□□ 0.14
SHMT1-209ENST00000582653 FAM3DQ96BQ1 224 aa15.95■□□□□ 0.14
SHMT1-209ENST00000582653 CNBD2Q96M20 576 aa15.95■□□□□ 0.14
SHMT1-209ENST00000582653 AGMATQ9BSE5 352 aa15.95■□□□□ 0.14
SHMT1-209ENST00000582653 PECRQ9BY49 303 aa15.95■□□□□ 0.14
SHMT1-209ENST00000582653 C11orf54Q9H0W9 315 aaPredicted RBP15.95■□□□□ 0.14
SHMT1-209ENST00000582653 Q9N2K0 584 aa15.95■□□□□ 0.14
SHMT1-209ENST00000582653 SCOCQ9UIL1 159 aa15.95■□□□□ 0.14
SHMT1-209ENST00000582653 RNF150Q9ULK6 438 aa15.95■□□□□ 0.14
SHMT1-209ENST00000582653 HSF4Q9ULV5 492 aa15.95■□□□□ 0.14
SHMT1-209ENST00000582653 LSM4Q9Y4Z0 139 aaKnown RBP15.95■□□□□ 0.14
SHMT1-209ENST00000582653 NDUFA3O95167 84 aa15.94■□□□□ 0.14
SHMT1-209ENST00000582653 NHLRC4P0CG21 123 aaPredicted RBP15.94■□□□□ 0.14
SHMT1-209ENST00000582653 PLAC9Q5JTB6 97 aa15.94■□□□□ 0.14
SHMT1-209ENST00000582653 HES5Q5TA89 166 aa15.94■□□□□ 0.14
SHMT1-209ENST00000582653 FAM71F2Q6NXP2 309 aa15.94■□□□□ 0.14
SHMT1-209ENST00000582653 MYOZ3Q8TDC0 251 aa15.94■□□□□ 0.14
SHMT1-209ENST00000582653 UBE2E2Q96LR5 201 aa15.94■□□□□ 0.14
SHMT1-209ENST00000582653 WWC2-AS2Q96NR7 200 aa15.94■□□□□ 0.14
SHMT1-209ENST00000582653 FBXL15Q9H469 300 aa15.94■□□□□ 0.14
SHMT1-209ENST00000582653 GNB4Q9HAV0 340 aa15.94■□□□□ 0.14
SHMT1-209ENST00000582653 KIAA1456Q9P272 454 aa15.94■□□□□ 0.14
SHMT1-209ENST00000582653 FBXO7Q9Y3I1 522 aa15.94■□□□□ 0.14
SHMT1-209ENST00000582653 V9GY05 133 aa15.94■□□□□ 0.14
SHMT1-209ENST00000582653 TRAV41A0A0B4J266 112 aa15.93■□□□□ 0.14
SHMT1-209ENST00000582653 HSPA12AO43301 675 aa15.93■□□□□ 0.14
SHMT1-209ENST00000582653 PROP1O75360 226 aa15.93■□□□□ 0.14
SHMT1-209ENST00000582653 SNRPBP14678 240 aaKnown RBP15.93■□□□□ 0.14
SHMT1-209ENST00000582653 ZBTB25P24278 435 aa15.93■□□□□ 0.14
SHMT1-209ENST00000582653 LINC00205P59089 165 aa15.93■□□□□ 0.14
SHMT1-209ENST00000582653 FHL3Q13643 280 aa15.93■□□□□ 0.14
SHMT1-209ENST00000582653 SSX1Q16384 188 aa15.93■□□□□ 0.14
SHMT1-209ENST00000582653 TMEM65Q6PI78 240 aa15.93■□□□□ 0.14
SHMT1-209ENST00000582653 DRAXINQ8NBI3 349 aaPredicted RBP15.93■□□□□ 0.14
SHMT1-209ENST00000582653 OR11H1Q8NG94 326 aa15.93■□□□□ 0.14
SHMT1-209ENST00000582653 OR5B12Q96R08 314 aa15.93■□□□□ 0.14
SHMT1-209ENST00000582653 CMSS1Q9BQ75 279 aaKnown RBP15.93■□□□□ 0.14
SHMT1-209ENST00000582653 ACOT13Q9NPJ3 140 aa15.93■□□□□ 0.14
SHMT1-209ENST00000582653 C12orf4Q9NQ89 552 aa15.93■□□□□ 0.14
SHMT1-209ENST00000582653 KMT2CQ8NEZ4 4911 aaKnown RBP15.92■□□□□ 0.14
SHMT1-209ENST00000582653 IGKV1-6A0A0C4DH72 117 aa15.92■□□□□ 0.14
SHMT1-209ENST00000582653 TMEM272A0A1B0GTI8 110 aa15.92■□□□□ 0.14
SHMT1-209ENST00000582653 H0YJW9 148 aa15.92■□□□□ 0.14
SHMT1-209ENST00000582653 H7C2Y5 167 aa15.92■□□□□ 0.14
SHMT1-209ENST00000582653 FCN1O00602 326 aa15.92■□□□□ 0.14
SHMT1-209ENST00000582653 ITGB1BP1O14713 200 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms