RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 VSIG10L2P0DP72 767 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 AKR1C4P17516 323 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 IL3RAP26951 378 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 GPR12P47775 334 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 RAB25P57735 213 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 SRPXP78539 464 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 LCN2P80188 198 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 BAMBIQ13145 260 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 DHRS2Q13268 280 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 ZNF818PQ6ZRF7 136 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 ABHD12Q8N2K0 398 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 DRAM1Q8N682 238 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 Q8N7P7 452 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 OR11H6Q8NGC7 330 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 MITD1Q8WV92 249 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 TMEM230Q96A57 120 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 TMEM186Q96B77 213 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 ADTRPQ96IZ2 230 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 S1PR3Q99500 378 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 SUCNR1Q9BXA5 334 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 CLEC7AQ9BXN2 247 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 REG4Q9BYZ8 158 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 OR2D2Q9H210 308 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 NAA60Q9H7X0 242 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 AMMECR1Q9Y4X0 333 aaPredicted RBP12.5□□□□□ -0.41
SS18-215ENST00000580642 INSIG2Q9Y5U4 225 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 ALG5Q9Y673 324 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 UNC79Q9P2D8 2635 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 CENPEQ02224 2701 aa12.5□□□□□ -0.41
SS18-215ENST00000580642 KIAA2026Q5HYC2 2103 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 A0A0B4J293 547 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 TEX13DA0A0J9YY54 714 aaPredicted RBP12.49□□□□□ -0.41
SS18-215ENST00000580642 FAM157AC9JC47 383 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 TOR1AO14656 332 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 PGLYRP1O75594 196 aaPredicted RBP12.49□□□□□ -0.41
SS18-215ENST00000580642 IFNA2P01563 188 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 HLA-AP01891 365 aaKnown RBP12.49□□□□□ -0.41
SS18-215ENST00000580642 F2RP25116 425 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 ZNF134P52741 427 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 ARF6P62330 175 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 TAGLNQ01995 201 aaKnown RBP12.49□□□□□ -0.41
SS18-215ENST00000580642 PAX8Q06710 450 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 CATR1Q13166 79 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 KRTAP1-3Q8IUG1 177 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 LINC01356Q8N9X3 169 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 ADAD2Q8NCV1 583 aaKnown RBP12.49□□□□□ -0.41
SS18-215ENST00000580642 COQ8AQ8NI60 647 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 PHB2Q99623 299 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 PARP12Q9H0J9 701 aaKnown RBP12.49□□□□□ -0.41
SS18-215ENST00000580642 SIRPDQ9H106 197 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 OR51J1Q9H342 316 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 LIN7CQ9NUP9 197 aaKnown RBP12.49□□□□□ -0.41
SS18-215ENST00000580642 KCNS2Q9ULS6 477 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 TACC2O95359 2948 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 APCP25054 2843 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 ABCA12Q86UK0 2595 aa12.49□□□□□ -0.41
SS18-215ENST00000580642 IGHV2-26A0A0B4J1V2 119 aa12.48□□□□□ -0.41
SS18-215ENST00000580642 H0Y980 276 aa12.48□□□□□ -0.41
SS18-215ENST00000580642 J3QLI3 93 aa12.48□□□□□ -0.41
SS18-215ENST00000580642 HSD17B6O14756 317 aa12.48□□□□□ -0.41
SS18-215ENST00000580642 ST8SIA5O15466 376 aa12.48□□□□□ -0.41
SS18-215ENST00000580642 IGLV1-47P01700 117 aa12.48□□□□□ -0.41
SS18-215ENST00000580642 PI3P19957 117 aa12.48□□□□□ -0.41
SS18-215ENST00000580642 GZMKP49863 264 aa12.48□□□□□ -0.41
SS18-215ENST00000580642 BCAP31P51572 246 aa12.48□□□□□ -0.41
SS18-215ENST00000580642 SUPT4H1P63272 117 aaKnown RBP12.48□□□□□ -0.41
SS18-215ENST00000580642 PPP1R1AQ13522 171 aa12.48□□□□□ -0.41
SS18-215ENST00000580642 EIF4EBP1Q13541 118 aaPredicted RBP12.48□□□□□ -0.41
SS18-215ENST00000580642 PHLDA2Q53GA4 152 aa12.48□□□□□ -0.41
SS18-215ENST00000580642 LRTM2Q8N967 370 aa12.48□□□□□ -0.41
SS18-215ENST00000580642 OR10X1Q8NGY0 326 aa12.48□□□□□ -0.41
SS18-215ENST00000580642 CD300LFQ8TDQ1 290 aa12.48□□□□□ -0.41
SS18-215ENST00000580642 SDHAF2Q9NX18 166 aa12.48□□□□□ -0.41
SS18-215ENST00000580642 ANKRD17O75179 2603 aaKnown RBP12.48□□□□□ -0.41
SS18-215ENST00000580642 C3orf85A0A1B0GTC6 90 aa12.47□□□□□ -0.41
SS18-215ENST00000580642 TXNL1O43396 289 aa12.47□□□□□ -0.41
SS18-215ENST00000580642 MMP9P14780 707 aa12.47□□□□□ -0.41
SS18-215ENST00000580642 RPA2P15927 270 aa12.47□□□□□ -0.41
SS18-215ENST00000580642 VAMP1P23763 118 aa12.47□□□□□ -0.41
SS18-215ENST00000580642 ZNF833PQ6ZTB9 187 aa12.47□□□□□ -0.41
SS18-215ENST00000580642 TBC1D26Q86UD7 250 aa12.47□□□□□ -0.41
SS18-215ENST00000580642 C12orf45Q8N5I9 185 aaPredicted RBP12.47□□□□□ -0.41
SS18-215ENST00000580642 CAPSLQ8WWF8 208 aa12.47□□□□□ -0.41
SS18-215ENST00000580642 ASB13Q8WXK3 278 aa12.47□□□□□ -0.41
SS18-215ENST00000580642 IL22RA2Q969J5 263 aa12.47□□□□□ -0.41
SS18-215ENST00000580642 Q96MF0 132 aa12.47□□□□□ -0.41
SS18-215ENST00000580642 MMP26Q9NRE1 261 aa12.47□□□□□ -0.41
SS18-215ENST00000580642 DOCK11Q5JSL3 2073 aa12.47□□□□□ -0.41
SS18-215ENST00000580642 A0A1B0GVG6 124 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 DUXBA0A1W2PPF3 345 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 HMX3A6NHT5 357 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 RBFOX2O43251 390 aaKnown RBP eCLIP12.46□□□□□ -0.41
SS18-215ENST00000580642 TOX4O94842 621 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 HLA-GP17693 338 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 KIR2DS2P43631 304 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 THBS3P49746 956 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 RRAS2P62070 204 aaPredicted RBP12.46□□□□□ -0.41
SS18-215ENST00000580642 HLA-DRB5Q30154 266 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 MINOS1Q5TGZ0 78 aa12.46□□□□□ -0.41
SS18-215ENST00000580642 ODF3L1Q8IXM7 274 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms