RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 HIST1H1DP16402 221 aaKnown RBP11.72□□□□□ -0.53
SS18-212ENST00000579061 CEACAM6P40199 344 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 GPR12P47775 334 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 OR3A3P47888 321 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 F2RL1P55085 397 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 SLC35B1P78383 322 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 MOGAT2Q3SYC2 334 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 C10orf99Q6UWK7 81 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 STPG2Q8N412 459 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 OR4A4PQ8NGN8 299 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 PHF21AQ96BD5 680 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 KCTD7Q96MP8 289 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 ZNF251Q9BRH9 671 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 AGMATQ9BSE5 352 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 GON7Q9BXV9 100 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 C11orf54Q9H0W9 315 aaPredicted RBP11.72□□□□□ -0.53
SS18-212ENST00000579061 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.72□□□□□ -0.53
SS18-212ENST00000579061 ZNF580Q9UK33 172 aa11.72□□□□□ -0.53
SS18-212ENST00000579061 A0A0B4J203 849 aa11.71□□□□□ -0.53
SS18-212ENST00000579061 SLC2A2P11168 524 aaPredicted RBP11.71□□□□□ -0.53
SS18-212ENST00000579061 SOX6P35712 828 aa11.71□□□□□ -0.53
SS18-212ENST00000579061 SERPINB10P48595 397 aa11.71□□□□□ -0.53
SS18-212ENST00000579061 ACTBP60709 375 aa11.71□□□□□ -0.53
SS18-212ENST00000579061 KIR2DS1Q14954 304 aa11.71□□□□□ -0.53
SS18-212ENST00000579061 SRSF7Q16629 238 aaKnown RBP eCLIP11.71□□□□□ -0.53
SS18-212ENST00000579061 NOL4LQ96MY1 436 aaPredicted RBP11.71□□□□□ -0.53
SS18-212ENST00000579061 CENPOQ9BU64 300 aa11.71□□□□□ -0.53
SS18-212ENST00000579061 OR51E2Q9H255 320 aa11.71□□□□□ -0.53
SS18-212ENST00000579061 ZFP57Q9NU63 452 aa11.71□□□□□ -0.53
SS18-212ENST00000579061 OR1A1Q9P1Q5 309 aa11.71□□□□□ -0.53
SS18-212ENST00000579061 IGKV1-6A0A0C4DH72 117 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 A0A1W2PRX2 142 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 OR5H14A6NHG9 310 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 LINC01548A6NM66 108 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 FABP7O15540 132 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 SCGNO76038 276 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 FCGR3AP08637 254 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 PF4V1P10720 104 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 GNB3P16520 340 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 SLC6A1P30531 599 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 SCAND1P57086 179 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 MMDQ15546 238 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 NEDD8Q15843 81 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 PDLIM3Q53GG5 364 aaPredicted RBP11.7□□□□□ -0.54
SS18-212ENST00000579061 SAMD5Q5TGI4 173 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 Q6ZS49 121 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 ZNF329Q86UD4 541 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 WFDC9Q8NEX5 89 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 NPBQ8NG41 125 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 ABHD14BQ96IU4 210 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 CHCHD6Q9BRQ6 235 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 CABLES2Q9BTV7 478 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 PARP12Q9H0J9 701 aaKnown RBP11.7□□□□□ -0.54
SS18-212ENST00000579061 ATG5Q9H1Y0 275 aa11.7□□□□□ -0.54
SS18-212ENST00000579061 SMIM30A4D0T7 59 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 NBR2O15453 112 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 NDUFA3O95167 84 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 CT45A6P0DMU7 189 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 CT45A5P0DMU8 189 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 CT45A7P0DMV0 189 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 CD36P16671 472 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 MC5RP33032 325 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 SDC2P34741 201 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 ARFRP1Q13795 201 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 PNLIPRP3Q17RR3 467 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 RPL39P5Q59GN2 51 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 KHDC1LQ5JSQ8 128 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 KPRPQ5T749 579 aaPredicted RBP11.69□□□□□ -0.54
SS18-212ENST00000579061 SFXN4Q6P4A7 337 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 TEX38Q6PEX7 206 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.69□□□□□ -0.54
SS18-212ENST00000579061 RNF5Q99942 180 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 DAPK2Q9UIK4 370 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 LINC00527Q9UJ94 153 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 ZNF221Q9UK13 617 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 GAB2Q9UQC2 676 aa11.69□□□□□ -0.54
SS18-212ENST00000579061 A0A075B6Q4 140 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 A0A087WXM4 84 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 TRBV6-7A0A0A0MS04 114 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 G3V4G9 280 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 TMEM127O75204 238 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 RBBP9O75884 186 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 TNFAIP8O95379 198 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 HLA-DRB1P01911 266 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 PF4P02776 101 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 IGF1P05019 195 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 DTYMKP23919 212 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 RPL23AP62750 156 aaKnown RBP11.68□□□□□ -0.54
SS18-212ENST00000579061 BEAN1Q3B7T3 259 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 TIMM50Q3ZCQ8 353 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 OR5AN1Q8NGI8 311 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 HSPB9Q9BQS6 159 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 VCX3AQ9NNX9 186 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 RDH8Q9NYR8 311 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 KIAA1456Q9P272 454 aa11.68□□□□□ -0.54
SS18-212ENST00000579061 ZNF107Q9UII5 783 aaPredicted RBP11.68□□□□□ -0.54
SS18-212ENST00000579061 LOC100506127A0A0U1RQW1 187 aa11.67□□□□□ -0.54
SS18-212ENST00000579061 H0YJW9 148 aa11.67□□□□□ -0.54
SS18-212ENST00000579061 PROP1O75360 226 aa11.67□□□□□ -0.54
SS18-212ENST00000579061 ELANEP08246 267 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms