RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 UTF1Q5T230 341 aa11.22□□□□□ -0.61
CCDC40-209ENST00000573474 SLC25A48Q6ZT89 311 aaKnown RBP11.22□□□□□ -0.61
CCDC40-209ENST00000573474 TBC1D26Q86UD7 250 aa11.22□□□□□ -0.61
CCDC40-209ENST00000573474 DRAM1Q8N682 238 aa11.22□□□□□ -0.61
CCDC40-209ENST00000573474 C8orf31Q8N9H6 132 aa11.22□□□□□ -0.61
CCDC40-209ENST00000573474 UXS1Q8NBZ7 420 aa11.22□□□□□ -0.61
CCDC40-209ENST00000573474 CT45A3Q8NHU0 189 aa11.22□□□□□ -0.61
CCDC40-209ENST00000573474 COQ8AQ8NI60 647 aa11.22□□□□□ -0.61
CCDC40-209ENST00000573474 NEURL2Q9BR09 285 aa11.22□□□□□ -0.61
CCDC40-209ENST00000573474 ONECUT1Q9UBC0 465 aa11.22□□□□□ -0.61
CCDC40-209ENST00000573474 SHPKQ9UHJ6 478 aa11.22□□□□□ -0.61
CCDC40-209ENST00000573474 GAB2Q9UQC2 676 aa11.22□□□□□ -0.61
CCDC40-209ENST00000573474 CENPEQ02224 2701 aa11.22□□□□□ -0.61
CCDC40-209ENST00000573474 CELSR2Q9HCU4 2923 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 C3orf85A0A1B0GTC6 90 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 RNF212BA8MTL3 300 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 SLC31A2O15432 143 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 TNFSF12O43508 249 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 B3GALNT1O75752 331 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 CCNKO75909 580 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 SULT1A3P0DMM9 295 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 SULT1A4P0DMN0 295 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 GNG10P50151 68 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 LCN2P80188 198 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 C1orf122Q6ZSJ8 110 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 AKAP14Q86UN6 197 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 LINC00311Q8N616 119 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 KIR3DL3Q8N743 410 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.21□□□□□ -0.61
CCDC40-209ENST00000573474 ABHD14BQ96IU4 210 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 TMEM133Q9H2Q1 129 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 IFI27L2Q9H2X8 130 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 POLR3KQ9Y2Y1 108 aaPredicted RBP11.21□□□□□ -0.61
CCDC40-209ENST00000573474 PTPN13Q12923 2485 aa11.21□□□□□ -0.61
CCDC40-209ENST00000573474 ARID1AO14497 2285 aa11.21□□□□□ -0.62
CCDC40-209ENST00000573474 IGHV2-70DA0A0C4DH43 119 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 A0A1W2PPE3 182 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 RAB29O14966 203 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 OR5AC1P0C628 307 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 USF1P22415 310 aaPredicted RBP11.2□□□□□ -0.62
CCDC40-209ENST00000573474 F2RP25116 425 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 ARF6P62330 175 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 PAX2Q02962 417 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 EIF4EBP1Q13541 118 aaPredicted RBP11.2□□□□□ -0.62
CCDC40-209ENST00000573474 TMEM187Q14656 261 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 ANKRD55Q3KP44 614 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 PRSS57Q6UWY2 283 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 ZNF66Q6ZN08 573 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 ABHD12Q8N2K0 398 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 OR11H7Q8NGC8 314 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 OR9G1Q8NH87 305 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 ZNF596Q8TC21 504 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 C5orf30Q96GV9 206 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 SDHAF2Q9NX18 166 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 PIPOXQ9P0Z9 390 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 MGAT4CQ9UBM8 478 aa11.2□□□□□ -0.62
CCDC40-209ENST00000573474 FAM157AC9JC47 383 aa11.19□□□□□ -0.62
CCDC40-209ENST00000573474 H0Y980 276 aa11.19□□□□□ -0.62
CCDC40-209ENST00000573474 J3QR06 171 aa11.19□□□□□ -0.62
CCDC40-209ENST00000573474 TOR1AO14656 332 aa11.19□□□□□ -0.62
CCDC40-209ENST00000573474 SRPXP78539 464 aa11.19□□□□□ -0.62
CCDC40-209ENST00000573474 SP6Q3SY56 376 aa11.19□□□□□ -0.62
CCDC40-209ENST00000573474 LIN54Q6MZP7 749 aa11.19□□□□□ -0.62
CCDC40-209ENST00000573474 LIAT1Q6ZQX7 453 aa11.19□□□□□ -0.62
CCDC40-209ENST00000573474 LYG1Q8N1E2 194 aa11.19□□□□□ -0.62
CCDC40-209ENST00000573474 Q8N7P7 452 aa11.19□□□□□ -0.62
CCDC40-209ENST00000573474 GLYATL2Q8WU03 294 aa11.19□□□□□ -0.62
CCDC40-209ENST00000573474 TNFRSF14Q92956 283 aa11.19□□□□□ -0.62
CCDC40-209ENST00000573474 TP53RKQ96S44 253 aa11.19□□□□□ -0.62
CCDC40-209ENST00000573474 GPHA2Q96T91 129 aa11.19□□□□□ -0.62
CCDC40-209ENST00000573474 HSD17B10Q99714 261 aaKnown RBP11.19□□□□□ -0.62
CCDC40-209ENST00000573474 TMEM222Q9H0R3 208 aa11.19□□□□□ -0.62
CCDC40-209ENST00000573474 METTL8Q9H825 291 aaKnown RBP11.19□□□□□ -0.62
CCDC40-209ENST00000573474 KPTNQ9Y664 436 aa11.19□□□□□ -0.62
CCDC40-209ENST00000573474 DOCK11Q5JSL3 2073 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 DBX1A6NMT0 343 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 HLA-GP17693 338 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 CXCL3P19876 107 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 PRTN3P24158 256 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 PRRX1P54821 245 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 CATR1Q13166 79 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 C2orf68Q2NKX9 166 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 BTNL3Q6UXE8 466 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 ODF3L1Q8IXM7 274 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 LGI3Q8N145 548 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 TCTEX1D1Q8N7M0 179 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 LRTM2Q8N967 370 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 OR13D1Q8NGV5 346 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 OR51H1Q8NH63 302 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 PPP1R14BQ96C90 147 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 MSI2Q96DH6 328 aaKnown RBP11.18□□□□□ -0.62
CCDC40-209ENST00000573474 ST6GAL2Q96JF0 529 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 S1PR3Q99500 378 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 HEXA-AS1Q9H8Q6 139 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 LIN7CQ9NUP9 197 aaKnown RBP11.18□□□□□ -0.62
CCDC40-209ENST00000573474 PRR13Q9NZ81 148 aa11.18□□□□□ -0.62
CCDC40-209ENST00000573474 YLPM1P49750 1951 aaKnown RBP11.17□□□□□ -0.62
CCDC40-209ENST00000573474 SAA2-SAA4A0A096LPE2 208 aa11.17□□□□□ -0.62
CCDC40-209ENST00000573474 IGHV2-26A0A0B4J1V2 119 aa11.17□□□□□ -0.62
CCDC40-209ENST00000573474 PIGBOS1A0A0B4J2F0 54 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms