RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 CDRT1O95170 752 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 SERPINA3P01011 423 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 ALDOBP05062 364 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 GIPP09681 153 aaPredicted RBP5.32□□□□□ -1.56
VPS53-213ENST00000572334 UBBP0CG47 229 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 GABRB1P18505 474 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 SLC6A1P30531 599 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 RPS19P39019 145 aaKnown RBP5.32□□□□□ -1.56
VPS53-213ENST00000572334 CCR9P51686 369 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 SNRPGP62308 76 aaKnown RBP5.32□□□□□ -1.56
VPS53-213ENST00000572334 RPS27AP62979 156 aaKnown RBP5.32□□□□□ -1.56
VPS53-213ENST00000572334 DHODHQ02127 395 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 DYRK1AQ13627 763 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 OPCMLQ14982 345 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 NHLRC3Q5JS37 347 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 SLC25A30Q5SVS4 291 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 TMEM244Q5VVB8 128 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 CENPVQ7Z7K6 275 aaPredicted RBP5.32□□□□□ -1.56
VPS53-213ENST00000572334 TRAPPC6BQ86SZ2 158 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 LAX1Q8IWV1 398 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 LILRB2Q8N423 598 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 MS4A15Q8N5U1 240 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 BVESQ8NE79 360 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 OR51T1Q8NGJ9 327 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 OR13A1Q8NGR1 328 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 OR13C9Q8NGT0 318 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 OR52N1Q8NH53 320 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 ZNF596Q8TC21 504 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 SPSB1Q96BD6 273 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 PELI1Q96FA3 418 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 PHYHIPLQ96FC7 376 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 NARS2Q96I59 477 aaKnown RBP5.32□□□□□ -1.56
VPS53-213ENST00000572334 KIRREL1Q96J84 757 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 CMTM3Q96MX0 182 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 LYSTQ99698 3801 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 LINC00574Q9H8X3 128 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 BABAM2Q9NXR7 383 aa5.32□□□□□ -1.56
VPS53-213ENST00000572334 EXOGQ9Y2C4 368 aaKnown RBP5.32□□□□□ -1.56
VPS53-213ENST00000572334 EXOSC1Q9Y3B2 195 aaKnown RBP5.32□□□□□ -1.56
VPS53-213ENST00000572334 DYNC2H1Q8NCM8 4307 aaKnown RBP5.32□□□□□ -1.56
VPS53-213ENST00000572334 TRGV10A0A0A0MS01 117 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 KBTBD11-OT1A0A1B0GTJ5 212 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 UBE2QL1A1L167 161 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 LINC01548A6NM66 108 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 ZNF729A6NN14 1252 aaPredicted RBP5.31□□□□□ -1.56
VPS53-213ENST00000572334 NPIPB11E5RHQ5 1161 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 E9PI62 339 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 SCO1O75880 301 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 IFNA10P01566 189 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 SNRNP70P08621 437 aaKnown RBP5.31□□□□□ -1.56
VPS53-213ENST00000572334 PF4V1P10720 104 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 CPEP16870 476 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 RAB3BP20337 219 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 NFYAP23511 347 aaPredicted RBP5.31□□□□□ -1.56
VPS53-213ENST00000572334 HOXD3P31249 432 aaPredicted RBP5.31□□□□□ -1.56
VPS53-213ENST00000572334 FAUP35544 74 aaKnown RBP5.31□□□□□ -1.56
VPS53-213ENST00000572334 RPL35P42766 123 aaKnown RBP5.31□□□□□ -1.56
VPS53-213ENST00000572334 PTGFRP43088 359 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 TSPAN5P62079 268 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 EIF5AP63241 154 aaKnown RBP5.31□□□□□ -1.56
VPS53-213ENST00000572334 MRPS10P82664 201 aaKnown RBP5.31□□□□□ -1.56
VPS53-213ENST00000572334 PAX5Q02548 391 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 ALKBH1Q13686 389 aaKnown RBP5.31□□□□□ -1.56
VPS53-213ENST00000572334 SMCO1Q147U7 214 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 ATXN7L3Q14CW9 347 aaPredicted RBP5.31□□□□□ -1.56
VPS53-213ENST00000572334 GUCA2BQ16661 112 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 KRBOX4Q5JUW0 171 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 NKAPLQ5M9Q1 402 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 VAX1Q5SQQ9 334 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 DNLZQ5SXM8 178 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 OR52W1Q6IF63 320 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 FAM53AQ6NSI3 398 aaPredicted RBP5.31□□□□□ -1.56
VPS53-213ENST00000572334 ZNF529Q6P280 563 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 FAM220AQ7Z4H9 259 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 ZNF329Q86UD4 541 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 TPRA1Q86W33 373 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 THNSL2Q86YJ6 484 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 MRPL41Q8IXM3 137 aaKnown RBP5.31□□□□□ -1.56
VPS53-213ENST00000572334 SAXO1Q8IYX7 474 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 OSR2Q8N2R0 312 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 C5orf56Q8N8D9 126 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 Q8NFD4 153 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 PLPPR1Q8TBJ4 325 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 RGP1Q92546 391 aaPredicted RBP5.31□□□□□ -1.56
VPS53-213ENST00000572334 LEAP2Q969E1 77 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 RBMXL1Q96E39 390 aaKnown RBP5.31□□□□□ -1.56
VPS53-213ENST00000572334 RNFT2Q96EX2 444 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 RCC1LQ96I51 464 aaKnown RBP5.31□□□□□ -1.56
VPS53-213ENST00000572334 NOL4LQ96MY1 436 aaPredicted RBP5.31□□□□□ -1.56
VPS53-213ENST00000572334 GAL3ST2Q9H3Q3 398 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 ZCCHC4Q9H5U6 513 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 ISG20L2Q9H9L3 353 aaKnown RBP5.31□□□□□ -1.56
VPS53-213ENST00000572334 COA4Q9NYJ1 87 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 CSMD3Q7Z407 3707 aa5.31□□□□□ -1.56
VPS53-213ENST00000572334 TRAV6A0A075B6T7 132 aa5.3□□□□□ -1.56
VPS53-213ENST00000572334 A0A0D9SG52 128 aa5.3□□□□□ -1.56
VPS53-213ENST00000572334 TRDV1A0A1B0GX56 115 aa5.3□□□□□ -1.56
VPS53-213ENST00000572334 METTL21EPA6NDL7 271 aa5.3□□□□□ -1.56
VPS53-213ENST00000572334 DBX1A6NMT0 343 aa5.3□□□□□ -1.56
VPS53-213ENST00000572334 SNRPGP15A8MWD9 76 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms