RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 MTCL1Q9Y4B5 1905 aaKnown RBP13.21□□□□□ -0.29
CIITA-204ENST00000570546 TGIF2-C20orf24A0A0A6YYL0 155 aa13.21□□□□□ -0.29
CIITA-204ENST00000570546 MSGN1A6NI15 193 aa13.21□□□□□ -0.29
CIITA-204ENST00000570546 PRR32B1ATL7 298 aa13.21□□□□□ -0.29
CIITA-204ENST00000570546 FOXC1Q12948 553 aa13.21□□□□□ -0.29
CIITA-204ENST00000570546 TAF15Q92804 592 aaKnown RBP eCLIP13.21□□□□□ -0.29
CIITA-204ENST00000570546 HARBI1Q96MB7 349 aa13.21□□□□□ -0.29
CIITA-204ENST00000570546 ARID1AO14497 2285 aa13.21□□□□□ -0.29
CIITA-204ENST00000570546 SRP14P37108 136 aaKnown RBP13.21□□□□□ -0.3
CIITA-204ENST00000570546 FLYWCH2Q96CP2 140 aaKnown RBP13.21□□□□□ -0.3
CIITA-204ENST00000570546 J3QR06 171 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 PRSS3P2Q8NHM4 247 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 TM2D1Q9BX74 207 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 TMEM265A0A087WTH1 108 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 SNURFLB1AK76 121 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 PPIHO43447 177 aaKnown RBP13.2□□□□□ -0.3
CIITA-204ENST00000570546 PTTG1IPP53801 180 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 MEF2BQ02080 365 aaPredicted RBP13.2□□□□□ -0.3
CIITA-204ENST00000570546 FGFRL1Q8N441 504 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 OR4X1Q8NH49 305 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 TP53RKQ96S44 253 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 CISD1Q9NZ45 108 aaKnown RBP13.2□□□□□ -0.3
CIITA-204ENST00000570546 PILRBQ9UKJ0 227 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 TET1Q8NFU7 2136 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 RNF222A6NCQ9 220 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 CLDN14O95500 239 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 CEBPDP49716 269 aaPredicted RBP13.2□□□□□ -0.3
CIITA-204ENST00000570546 OR1L1Q8NH94 360 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 RTBDNQ9BSG5 229 aaPredicted RBP13.2□□□□□ -0.3
CIITA-204ENST00000570546 SAP30LQ9HAJ7 183 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 PXMP4Q9Y6I8 212 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 CD82P27701 267 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 RSPO4Q2I0M5 234 aaPredicted RBP13.2□□□□□ -0.3
CIITA-204ENST00000570546 TGIF2LXQ8IUE1 241 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 GFI1Q99684 422 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 SPAG17Q6Q759 2223 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 LOC105371267A0A1B0GV96 52 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 FAM90A27PA6NNH2 459 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 OR4C5Q8NGB2 326 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 HIST1H2BAQ96A08 127 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 P2RX4Q99571 388 aa13.2□□□□□ -0.3
CIITA-204ENST00000570546 CHCHD2Q9Y6H1 151 aaPredicted RBP13.2□□□□□ -0.3
CIITA-204ENST00000570546 COX5BP10606 129 aa13.19□□□□□ -0.3
CIITA-204ENST00000570546 MEGF10Q96KG7 1140 aa13.19□□□□□ -0.3
CIITA-204ENST00000570546 Q6ZN92 141 aa13.19□□□□□ -0.3
CIITA-204ENST00000570546 OR4C12Q96R67 309 aa13.19□□□□□ -0.3
CIITA-204ENST00000570546 DDA1Q9BW61 102 aa13.19□□□□□ -0.3
CIITA-204ENST00000570546 RAB29O14966 203 aa13.19□□□□□ -0.3
CIITA-204ENST00000570546 EIF3GO75821 320 aaKnown RBP eCLIP13.19□□□□□ -0.3
CIITA-204ENST00000570546 ZNF826PQ6ZT77 177 aa13.19□□□□□ -0.3
CIITA-204ENST00000570546 SRD5A3Q9H8P0 318 aa13.19□□□□□ -0.3
CIITA-204ENST00000570546 NPVFQ9HCQ7 196 aa13.19□□□□□ -0.3
CIITA-204ENST00000570546 CARHSP1Q9Y2V2 147 aaKnown RBP13.19□□□□□ -0.3
CIITA-204ENST00000570546 SUCLG1P53597 346 aaKnown RBP13.19□□□□□ -0.3
CIITA-204ENST00000570546 C19orf35Q6ZS72 473 aa13.19□□□□□ -0.3
CIITA-204ENST00000570546 FAM214BQ7L5A3 538 aa13.19□□□□□ -0.3
CIITA-204ENST00000570546 SGMS2Q8NHU3 365 aa13.19□□□□□ -0.3
CIITA-204ENST00000570546 HES7Q9BYE0 225 aa13.19□□□□□ -0.3
CIITA-204ENST00000570546 MGST3O14880 152 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 ELOBQ15370 118 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 TGIF2LYQ8IUE0 185 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 IL36RNQ9UBH0 155 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 ZMAT5Q9UDW3 170 aaKnown RBP13.18□□□□□ -0.3
CIITA-204ENST00000570546 NDUFB4O95168 129 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 NHLH1Q02575 133 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 OR1L8Q8NGR8 309 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 MARS2Q96GW9 593 aaKnown RBP13.18□□□□□ -0.3
CIITA-204ENST00000570546 SBF1O95248 1867 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 FAM90A26D6RGX4 464 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 NEURL1O76050 574 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 P01737 135 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 KCNMB1Q16558 191 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 PERPQ96FX8 193 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 DOCK4Q8N1I0 1966 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 TEX50A0A1B0GTY4 177 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 APCSP02743 223 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 C1orf174Q8IYL3 243 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 ZNF596Q8TC21 504 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 RND1Q92730 232 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 SLC25A28Q96A46 364 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 SCN2AQ99250 2005 aa13.18□□□□□ -0.3
CIITA-204ENST00000570546 ACAA1P09110 424 aaPredicted RBP13.17□□□□□ -0.3
CIITA-204ENST00000570546 CEACAM3P40198 252 aa13.17□□□□□ -0.3
CIITA-204ENST00000570546 LSM10Q969L4 123 aaKnown RBP13.17□□□□□ -0.3
CIITA-204ENST00000570546 A0A1B0GTI1 187 aa13.17□□□□□ -0.3
CIITA-204ENST00000570546 MPDU1O75352 247 aa13.17□□□□□ -0.3
CIITA-204ENST00000570546 OR5AL1P0C617 328 aa13.17□□□□□ -0.3
CIITA-204ENST00000570546 PCGF1Q9BSM1 259 aa13.17□□□□□ -0.3
CIITA-204ENST00000570546 OR2J3O76001 311 aa13.17□□□□□ -0.3
CIITA-204ENST00000570546 IGLV3-19P01714 112 aa13.17□□□□□ -0.3
CIITA-204ENST00000570546 TNFRSF9Q07011 255 aa13.17□□□□□ -0.3
CIITA-204ENST00000570546 ASCL5Q7RTU5 278 aa13.17□□□□□ -0.3
CIITA-204ENST00000570546 ASCL3Q9NQ33 180 aa13.17□□□□□ -0.3
CIITA-204ENST00000570546 IGSF23A1L1A6 192 aa13.17□□□□□ -0.3
CIITA-204ENST00000570546 CXorf65A6NEN9 183 aa13.17□□□□□ -0.3
CIITA-204ENST00000570546 OPN3Q9H1Y3 402 aaPredicted RBP13.17□□□□□ -0.3
CIITA-204ENST00000570546 SYNGR3O43761 229 aa13.16□□□□□ -0.3
CIITA-204ENST00000570546 CD3EP07766 207 aa13.16□□□□□ -0.3
CIITA-204ENST00000570546 WNT5AP41221 380 aa13.16□□□□□ -0.3
CIITA-204ENST00000570546 IZUMO4Q1ZYL8 232 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms