RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 RAB5CP51148 216 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 BRWD1-AS2P59051 145 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 CISD2Q8N5K1 135 aaKnown RBP16.93■□□□□ 0.3
CLN3-230ENST00000568076 NINJ1Q92982 152 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 SCRT1Q9BWW7 348 aa16.93■□□□□ 0.3
CLN3-230ENST00000568076 MRPL37Q9BZE1 423 aaKnown RBP16.93■□□□□ 0.3
CLN3-230ENST00000568076 STRAPQ9Y3F4 350 aaKnown RBP16.93■□□□□ 0.3
CLN3-230ENST00000568076 PRH1P02810 166 aa16.92■□□□□ 0.3
CLN3-230ENST00000568076 SFTA3P0C7M3 94 aa16.92■□□□□ 0.3
CLN3-230ENST00000568076 DVL1P1P54792 670 aaPredicted RBP16.92■□□□□ 0.3
CLN3-230ENST00000568076 FAM90A1Q86YD7 464 aa16.92■□□□□ 0.3
CLN3-230ENST00000568076 SPACA3Q8IXA5 215 aa16.92■□□□□ 0.3
CLN3-230ENST00000568076 ITLN1Q8WWA0 313 aa16.92■□□□□ 0.3
CLN3-230ENST00000568076 RAB40CQ96S21 281 aa16.92■□□□□ 0.3
CLN3-230ENST00000568076 NBEAQ8NFP9 2946 aa16.92■□□□□ 0.3
CLN3-230ENST00000568076 A0A0G2JNJ9 132 aa16.91■□□□□ 0.3
CLN3-230ENST00000568076 SYNGR2O43760 224 aa16.91■□□□□ 0.3
CLN3-230ENST00000568076 LHBP01229 141 aa16.91■□□□□ 0.3
CLN3-230ENST00000568076 OR2B11Q5JQS5 317 aa16.91■□□□□ 0.3
CLN3-230ENST00000568076 OR2G3Q8NGZ4 309 aa16.91■□□□□ 0.3
CLN3-230ENST00000568076 Q9UFV3 132 aa16.91■□□□□ 0.3
CLN3-230ENST00000568076 WSB1Q9Y6I7 421 aa16.91■□□□□ 0.3
CLN3-230ENST00000568076 SPTBN2O15020 2390 aa16.91■□□□□ 0.3
CLN3-230ENST00000568076 DEFB108AA8MXU0 73 aa16.91■□□□□ 0.3
CLN3-230ENST00000568076 IAPPP10997 89 aa16.91■□□□□ 0.3
CLN3-230ENST00000568076 RPL23AP62750 156 aaKnown RBP16.91■□□□□ 0.3
CLN3-230ENST00000568076 TMEM267Q0VDI3 215 aaPredicted RBP16.91■□□□□ 0.3
CLN3-230ENST00000568076 BTNL3Q6UXE8 466 aa16.91■□□□□ 0.3
CLN3-230ENST00000568076 ABHD14AQ9BUJ0 271 aa16.91■□□□□ 0.3
CLN3-230ENST00000568076 APC2O95996 2303 aa16.9■□□□□ 0.3
CLN3-230ENST00000568076 PTPRZ1P23471 2315 aaPredicted RBP16.9■□□□□ 0.3
CLN3-230ENST00000568076 CD40P25942 277 aa16.9■□□□□ 0.3
CLN3-230ENST00000568076 SULT1A1P50225 295 aa16.9■□□□□ 0.3
CLN3-230ENST00000568076 CACNA1DQ01668 2161 aa16.9■□□□□ 0.3
CLN3-230ENST00000568076 ATP5SQ99766 215 aa16.9■□□□□ 0.3
CLN3-230ENST00000568076 AGMATQ9BSE5 352 aa16.9■□□□□ 0.3
CLN3-230ENST00000568076 MMP24Q9Y5R2 645 aa16.9■□□□□ 0.3
CLN3-230ENST00000568076 C17orf98A8MV24 154 aa16.89■□□□□ 0.3
CLN3-230ENST00000568076 PRRG2O14669 202 aa16.89■□□□□ 0.3
CLN3-230ENST00000568076 P0C879 139 aa16.89■□□□□ 0.3
CLN3-230ENST00000568076 HTD2P86397 168 aa16.89■□□□□ 0.3
CLN3-230ENST00000568076 RUNX1Q01196 453 aa16.89■□□□□ 0.3
CLN3-230ENST00000568076 FAM201AQ5SY85 155 aa16.89■□□□□ 0.3
CLN3-230ENST00000568076 STX12Q86Y82 276 aa16.89■□□□□ 0.3
CLN3-230ENST00000568076 ZNRF1Q8ND25 227 aa16.89■□□□□ 0.3
CLN3-230ENST00000568076 FAM213BQ8TBF2 198 aa16.89■□□□□ 0.3
CLN3-230ENST00000568076 SNX22Q96L94 193 aa16.89■□□□□ 0.3
CLN3-230ENST00000568076 SCNM1Q9BWG6 230 aa16.89■□□□□ 0.3
CLN3-230ENST00000568076 SEBOXQ9HB31 216 aaPredicted RBP16.89■□□□□ 0.3
CLN3-230ENST00000568076 ODAMA1E959 279 aa16.89■□□□□ 0.29
CLN3-230ENST00000568076 TRIM77I1YAP6 450 aa16.89■□□□□ 0.29
CLN3-230ENST00000568076 ST8SIA5O15466 376 aa16.89■□□□□ 0.29
CLN3-230ENST00000568076 SPINT2O43291 252 aa16.89■□□□□ 0.29
CLN3-230ENST00000568076 ATF4P18848 351 aaPredicted RBP16.89■□□□□ 0.29
CLN3-230ENST00000568076 NPBWR1P48145 328 aa16.89■□□□□ 0.29
CLN3-230ENST00000568076 LINC00205P59089 165 aa16.89■□□□□ 0.29
CLN3-230ENST00000568076 ZNF816Q0VGE8 651 aaPredicted RBP16.89■□□□□ 0.29
CLN3-230ENST00000568076 MSMO1Q15800 293 aa16.89■□□□□ 0.29
CLN3-230ENST00000568076 LTC4SQ16873 150 aa16.89■□□□□ 0.29
CLN3-230ENST00000568076 KCNJ16Q9NPI9 418 aa16.89■□□□□ 0.29
CLN3-230ENST00000568076 RP1L1Q8IWN7 2480 aaPredicted RBP16.89■□□□□ 0.29
CLN3-230ENST00000568076 MGST3O14880 152 aa16.88■□□□□ 0.29
CLN3-230ENST00000568076 S1PR2O95136 353 aa16.88■□□□□ 0.29
CLN3-230ENST00000568076 G6PCP35575 357 aa16.88■□□□□ 0.29
CLN3-230ENST00000568076 ARL16Q0P5N6 197 aa16.88■□□□□ 0.29
CLN3-230ENST00000568076 TBR1Q16650 682 aa16.88■□□□□ 0.29
CLN3-230ENST00000568076 TRAT1Q6PIZ9 186 aa16.88■□□□□ 0.29
CLN3-230ENST00000568076 MRGPRGQ86SM5 289 aa16.88■□□□□ 0.29
CLN3-230ENST00000568076 COMMD1Q8N668 190 aa16.88■□□□□ 0.29
CLN3-230ENST00000568076 TCTEX1D2Q8WW35 142 aa16.88■□□□□ 0.29
CLN3-230ENST00000568076 COA4Q9NYJ1 87 aa16.88■□□□□ 0.29
CLN3-230ENST00000568076 PSENENQ9NZ42 101 aa16.88■□□□□ 0.29
CLN3-230ENST00000568076 PSG11Q9UQ72 335 aa16.88■□□□□ 0.29
CLN3-230ENST00000568076 LINC00473A8K010 186 aa16.88■□□□□ 0.29
CLN3-230ENST00000568076 KRASP01116 189 aa16.88■□□□□ 0.29
CLN3-230ENST00000568076 ADH4P08319 380 aa16.88■□□□□ 0.29
CLN3-230ENST00000568076 GATA4P43694 442 aa16.88■□□□□ 0.29
CLN3-230ENST00000568076 RPS23P62266 143 aaKnown RBP16.88■□□□□ 0.29
CLN3-230ENST00000568076 GUK1Q16774 197 aa16.88■□□□□ 0.29
CLN3-230ENST00000568076 TOR1AO14656 332 aa16.87■□□□□ 0.29
CLN3-230ENST00000568076 IGHV1-46P01743 117 aa16.87■□□□□ 0.29
CLN3-230ENST00000568076 CATR1Q13166 79 aa16.87■□□□□ 0.29
CLN3-230ENST00000568076 CR1LQ2VPA4 569 aa16.87■□□□□ 0.29
CLN3-230ENST00000568076 TMEM88Q6PEY1 159 aa16.87■□□□□ 0.29
CLN3-230ENST00000568076 HAPLN4Q86UW8 402 aa16.87■□□□□ 0.29
CLN3-230ENST00000568076 SH3BGRL2Q9UJC5 107 aa16.87■□□□□ 0.29
CLN3-230ENST00000568076 A0A1B0GV50 99 aa16.86■□□□□ 0.29
CLN3-230ENST00000568076 UMAD1C9J7I0 102 aa16.86■□□□□ 0.29
CLN3-230ENST00000568076 CLDN1O95832 211 aa16.86■□□□□ 0.29
CLN3-230ENST00000568076 METTL15P1P0C7V9 234 aa16.86■□□□□ 0.29
CLN3-230ENST00000568076 SELLP14151 372 aa16.86■□□□□ 0.29
CLN3-230ENST00000568076 Q3ZCU0 254 aa16.86■□□□□ 0.29
CLN3-230ENST00000568076 GNPNAT1Q96EK6 184 aaPredicted RBP16.86■□□□□ 0.29
CLN3-230ENST00000568076 PLPPR2Q96GM1 343 aa16.86■□□□□ 0.29
CLN3-230ENST00000568076 COL25A1Q9BXS0 654 aaPredicted RBP16.86■□□□□ 0.29
CLN3-230ENST00000568076 GCM1Q9NP62 436 aa16.86■□□□□ 0.29
CLN3-230ENST00000568076 ACACAQ13085 2346 aa16.86■□□□□ 0.29
CLN3-230ENST00000568076 PROP1O75360 226 aa16.86■□□□□ 0.29
CLN3-230ENST00000568076 SNAPINO95295 136 aa16.86■□□□□ 0.29
CLN3-230ENST00000568076 GZMHP20718 246 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms