RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 TRBV6-6A0A0A6YYG2 114 aa11.62□□□□□ -0.55
CLN3-222ENST00000566083 IGHV7-81A0A0B4J1V7 117 aa11.62□□□□□ -0.55
CLN3-222ENST00000566083 PTGES3LE9PB15 166 aa11.62□□□□□ -0.55
CLN3-222ENST00000566083 ATP6V0E1O15342 81 aa11.62□□□□□ -0.55
CLN3-222ENST00000566083 ZBTB25P24278 435 aa11.62□□□□□ -0.55
CLN3-222ENST00000566083 PSMA1P25786 263 aaKnown RBP11.62□□□□□ -0.55
CLN3-222ENST00000566083 ECI1P42126 302 aa11.62□□□□□ -0.55
CLN3-222ENST00000566083 RAB9AP51151 201 aa11.62□□□□□ -0.55
CLN3-222ENST00000566083 LUMP51884 338 aaPredicted RBP11.62□□□□□ -0.55
CLN3-222ENST00000566083 MED22Q15528 200 aa11.62□□□□□ -0.55
CLN3-222ENST00000566083 ZNF260Q3ZCT1 412 aa11.62□□□□□ -0.55
CLN3-222ENST00000566083 PYHIN1Q6K0P9 492 aa11.62□□□□□ -0.55
CLN3-222ENST00000566083 ZNF880Q6PDB4 577 aa11.62□□□□□ -0.55
CLN3-222ENST00000566083 ZNF429Q86V71 674 aa11.62□□□□□ -0.55
CLN3-222ENST00000566083 SVOPQ8N4V2 548 aa11.62□□□□□ -0.55
CLN3-222ENST00000566083 MINDY2Q8NBR6 621 aa11.62□□□□□ -0.55
CLN3-222ENST00000566083 UFD1Q92890 307 aa11.62□□□□□ -0.55
CLN3-222ENST00000566083 IFI27L2Q9H2X8 130 aa11.62□□□□□ -0.55
CLN3-222ENST00000566083 LSM4Q9Y4Z0 139 aaKnown RBP11.62□□□□□ -0.55
CLN3-222ENST00000566083 WSB1Q9Y6I7 421 aa11.62□□□□□ -0.55
CLN3-222ENST00000566083 TMEM14DPA8MWL7 114 aa11.61□□□□□ -0.55
CLN3-222ENST00000566083 I3L521 148 aa11.61□□□□□ -0.55
CLN3-222ENST00000566083 ARL6IP5O75915 188 aa11.61□□□□□ -0.55
CLN3-222ENST00000566083 UCHL1P09936 223 aa11.61□□□□□ -0.55
CLN3-222ENST00000566083 CD40LGP29965 261 aa11.61□□□□□ -0.55
CLN3-222ENST00000566083 OR3A3P47888 321 aa11.61□□□□□ -0.55
CLN3-222ENST00000566083 CRIP2P52943 208 aaPredicted RBP11.61□□□□□ -0.55
CLN3-222ENST00000566083 PLGLAQ15195 96 aa11.61□□□□□ -0.55
CLN3-222ENST00000566083 SCOCQ9UIL1 159 aa11.61□□□□□ -0.55
CLN3-222ENST00000566083 HSF4Q9ULV5 492 aa11.61□□□□□ -0.55
CLN3-222ENST00000566083 ZNF256Q9Y2P7 627 aaPredicted RBP11.61□□□□□ -0.55
CLN3-222ENST00000566083 WASHC3Q9Y3C0 194 aa11.61□□□□□ -0.55
CLN3-222ENST00000566083 TPRKBQ9Y3C4 175 aa11.61□□□□□ -0.55
CLN3-222ENST00000566083 G3V318 75 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 RRHO14718 337 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 ARPC1BO15143 372 aaKnown RBP11.6□□□□□ -0.55
CLN3-222ENST00000566083 HSPA12AO43301 675 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 GSTP1P09211 210 aaKnown RBP11.6□□□□□ -0.55
CLN3-222ENST00000566083 ARSBP15848 533 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 PSMD7P51665 324 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 INSL4Q14641 139 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 FAM27D1Q5T7N8 215 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 OR10K2Q6IF99 312 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 SETD6Q8TBK2 473 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 KLK15Q9H2R5 256 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 PLGRKTQ9HBL7 147 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 H7C2Y5 167 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 ST8SIA5O15466 376 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 QRFPP83859 136 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 UNC119Q13432 240 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 KIAA0141Q14154 515 aaPredicted RBP11.6□□□□□ -0.55
CLN3-222ENST00000566083 CD200R1LQ6Q8B3 271 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 FAM131AQ6UXB0 335 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 FAM89BQ8N5H3 189 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 OR5AN1Q8NGI8 311 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 PTX4Q96A99 478 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 RITA1Q96K30 269 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 AGMATQ9BSE5 352 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 ISYNA1Q9NPH2 558 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 C12orf4Q9NQ89 552 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 FOXA2Q9Y261 457 aaPredicted RBP11.6□□□□□ -0.55
CLN3-222ENST00000566083 LSM2Q9Y333 95 aaKnown RBP11.6□□□□□ -0.55
CLN3-222ENST00000566083 U3KQK5 164 aa11.6□□□□□ -0.55
CLN3-222ENST00000566083 COL7A1Q02388 2944 aa11.59□□□□□ -0.55
CLN3-222ENST00000566083 SLC17A2O00624 439 aa11.59□□□□□ -0.55
CLN3-222ENST00000566083 CT45A6P0DMU7 189 aa11.59□□□□□ -0.55
CLN3-222ENST00000566083 CT45A5P0DMU8 189 aa11.59□□□□□ -0.55
CLN3-222ENST00000566083 CT45A7P0DMV0 189 aa11.59□□□□□ -0.55
CLN3-222ENST00000566083 CNTFRP26992 372 aa11.59□□□□□ -0.55
CLN3-222ENST00000566083 CEACAM6P40199 344 aa11.59□□□□□ -0.55
CLN3-222ENST00000566083 CX3CL1P78423 397 aa11.59□□□□□ -0.55
CLN3-222ENST00000566083 TPBGQ13641 420 aa11.59□□□□□ -0.55
CLN3-222ENST00000566083 AKIRIN2Q53H80 203 aa11.59□□□□□ -0.55
CLN3-222ENST00000566083 PRR25Q96S07 402 aa11.59□□□□□ -0.55
CLN3-222ENST00000566083 TSNAXQ99598 290 aaKnown RBP11.59□□□□□ -0.55
CLN3-222ENST00000566083 NICN1Q9BSH3 213 aa11.59□□□□□ -0.55
CLN3-222ENST00000566083 LPAR5Q9H1C0 372 aa11.59□□□□□ -0.55
CLN3-222ENST00000566083 GNB4Q9HAV0 340 aa11.59□□□□□ -0.55
CLN3-222ENST00000566083 ZNF221Q9UK13 617 aa11.59□□□□□ -0.55
CLN3-222ENST00000566083 NBEAL2Q6ZNJ1 2754 aa11.58□□□□□ -0.55
CLN3-222ENST00000566083 RYR3Q15413 4870 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 A0A1W2PN81 502 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 LINC01619G3V211 115 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 H0YJW9 148 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 OVOL1O14753 267 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 SPDEFO95238 335 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 CHRNA7P36544 502 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 SERPINB10P48595 397 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 HLA-DRB3P79483 266 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 MRPS15P82914 257 aaKnown RBP11.58□□□□□ -0.56
CLN3-222ENST00000566083 IRF3Q14653 427 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 RAB11BQ15907 218 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 ECSCRQ19T08 205 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 LIPKQ5VXJ0 399 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 ZNF562Q6V9R5 426 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 OR56B1Q8NGI3 324 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 FLYWCH2Q96CP2 140 aaKnown RBP11.58□□□□□ -0.56
CLN3-222ENST00000566083 CENPOQ9BU64 300 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 FBXL15Q9H469 300 aa11.58□□□□□ -0.56
CLN3-222ENST00000566083 SLA2Q9H6Q3 261 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms