RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 MOB3AQ96BX8 217 aa16.76■□□□□ 0.27
CLN3-212ENST00000564574 IFI27L2Q9H2X8 130 aa16.76■□□□□ 0.27
CLN3-212ENST00000564574 SCP2D1Q9UJQ7 156 aa16.76■□□□□ 0.27
CLN3-212ENST00000564574 GAB2Q9UQC2 676 aa16.76■□□□□ 0.27
CLN3-212ENST00000564574 ZANQ9Y493 2812 aa16.76■□□□□ 0.27
CLN3-212ENST00000564574 IGHV3OR16-10A0A075B7F0 116 aa16.75■□□□□ 0.27
CLN3-212ENST00000564574 LEUTXA8MZ59 168 aa16.75■□□□□ 0.27
CLN3-212ENST00000564574 OR8U9P0C7N5 309 aa16.75■□□□□ 0.27
CLN3-212ENST00000564574 ECI1P42126 302 aa16.75■□□□□ 0.27
CLN3-212ENST00000564574 ZNF137PP52743 207 aa16.75■□□□□ 0.27
CLN3-212ENST00000564574 FAM71F2Q6NXP2 309 aa16.75■□□□□ 0.27
CLN3-212ENST00000564574 FAAP20Q6NZ36 180 aa16.75■□□□□ 0.27
CLN3-212ENST00000564574 C9orf139Q6ZV77 190 aa16.75■□□□□ 0.27
CLN3-212ENST00000564574 LHFPL1Q86WI0 220 aa16.75■□□□□ 0.27
CLN3-212ENST00000564574 LYG1Q8N1E2 194 aa16.75■□□□□ 0.27
CLN3-212ENST00000564574 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.75■□□□□ 0.27
CLN3-212ENST00000564574 OR8U1Q8NH10 309 aa16.75■□□□□ 0.27
CLN3-212ENST00000564574 GSX1Q9H4S2 264 aaPredicted RBP16.75■□□□□ 0.27
CLN3-212ENST00000564574 MCUBQ9NWR8 336 aa16.75■□□□□ 0.27
CLN3-212ENST00000564574 DPM3Q9P2X0 92 aa16.75■□□□□ 0.27
CLN3-212ENST00000564574 ZNF221Q9UK13 617 aa16.75■□□□□ 0.27
CLN3-212ENST00000564574 A0A1W2PRD5 423 aa16.74■□□□□ 0.27
CLN3-212ENST00000564574 A0A1W2PRF3 423 aa16.74■□□□□ 0.27
CLN3-212ENST00000564574 A0A1W2PRM7 423 aa16.74■□□□□ 0.27
CLN3-212ENST00000564574 RAB29O14966 203 aa16.74■□□□□ 0.27
CLN3-212ENST00000564574 SAA4P35542 130 aa16.74■□□□□ 0.27
CLN3-212ENST00000564574 GPR12P47775 334 aa16.74■□□□□ 0.27
CLN3-212ENST00000564574 MSMO1Q15800 293 aa16.74■□□□□ 0.27
CLN3-212ENST00000564574 SCGB2B2Q4G0G5 96 aa16.74■□□□□ 0.27
CLN3-212ENST00000564574 RUSC1-AS1Q66K80 236 aa16.74■□□□□ 0.27
CLN3-212ENST00000564574 C16orf87Q6PH81 154 aa16.74■□□□□ 0.27
CLN3-212ENST00000564574 PIP4P2Q8N4L2 257 aa16.74■□□□□ 0.27
CLN3-212ENST00000564574 TERB2Q8NHR7 220 aa16.74■□□□□ 0.27
CLN3-212ENST00000564574 MS4A7Q9GZW8 240 aaPredicted RBP16.74■□□□□ 0.27
CLN3-212ENST00000564574 OR2D2Q9H210 308 aa16.74■□□□□ 0.27
CLN3-212ENST00000564574 PALMDQ9NP74 551 aa16.74■□□□□ 0.27
CLN3-212ENST00000564574 CDC42EP3Q9UKI2 254 aa16.74■□□□□ 0.27
CLN3-212ENST00000564574 MTORP42345 2549 aa16.74■□□□□ 0.27
CLN3-212ENST00000564574 OOSP1A8MZH6 123 aa16.73■□□□□ 0.27
CLN3-212ENST00000564574 LY6LH3BQJ8 138 aa16.73■□□□□ 0.27
CLN3-212ENST00000564574 EPHA1P21709 976 aa16.73■□□□□ 0.27
CLN3-212ENST00000564574 SRP14P37108 136 aaKnown RBP16.73■□□□□ 0.27
CLN3-212ENST00000564574 UCP3P55916 312 aa16.73■□□□□ 0.27
CLN3-212ENST00000564574 FXYD4P59646 89 aa16.73■□□□□ 0.27
CLN3-212ENST00000564574 AADACL3Q5VUY0 350 aa16.73■□□□□ 0.27
CLN3-212ENST00000564574 LPCAT3Q6P1A2 487 aa16.73■□□□□ 0.27
CLN3-212ENST00000564574 BRD3OSQ6XYD6 125 aa16.73■□□□□ 0.27
CLN3-212ENST00000564574 ODF3L1Q8IXM7 274 aa16.73■□□□□ 0.27
CLN3-212ENST00000564574 ZNF645Q8N7E2 425 aa16.73■□□□□ 0.27
CLN3-212ENST00000564574 OR51S1Q8NGJ8 323 aa16.73■□□□□ 0.27
CLN3-212ENST00000564574 MALSU1Q96EH3 234 aa16.73■□□□□ 0.27
CLN3-212ENST00000564574 S1PR3Q99500 378 aa16.73■□□□□ 0.27
CLN3-212ENST00000564574 FXYD6Q9H0Q3 95 aa16.73■□□□□ 0.27
CLN3-212ENST00000564574 ZNRD1Q9P1U0 126 aa16.73■□□□□ 0.27
CLN3-212ENST00000564574 TLN2Q9Y4G6 2542 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 IGKV1D-13A0A0B4J2D9 117 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 LINC00854A0A1B0GVQ3 168 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 OR5H14A6NHG9 310 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 PLA2G10O15496 165 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 LYRM1O43325 122 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 TXNL1O43396 289 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 IGKV1-13P0DP09 117 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 IFITM3Q01628 133 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 SCGB2A2Q13296 93 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 ASAH1Q13510 395 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 PLA1AQ53H76 456 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 TPTE2P1Q5T6R2 138 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 IDO2Q6ZQW0 420 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 LHFPL4Q7Z7J7 247 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 LDLRAD3Q86YD5 345 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 ZBTB34Q8NCN2 500 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 SECTM1Q8WVN6 248 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 ST6GALNAC6Q969X2 333 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 ABHD14BQ96IU4 210 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 AKR1E2Q96JD6 320 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 BEX2Q9BXY8 128 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 SLC5A7Q9GZV3 580 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 RNF150Q9ULK6 438 aa16.72■□□□□ 0.27
CLN3-212ENST00000564574 SAA2-SAA4A0A096LPE2 208 aa16.71■□□□□ 0.27
CLN3-212ENST00000564574 HSD17B6O14756 317 aa16.71■□□□□ 0.27
CLN3-212ENST00000564574 SAA2P0DJI9 122 aaPredicted RBP16.71■□□□□ 0.27
CLN3-212ENST00000564574 DEFA1P59665 94 aa16.71■□□□□ 0.27
CLN3-212ENST00000564574 DEFA3P59666 94 aa16.71■□□□□ 0.27
CLN3-212ENST00000564574 ZNF816Q0VGE8 651 aaPredicted RBP16.71■□□□□ 0.27
CLN3-212ENST00000564574 SURF2Q15527 256 aaPredicted RBP16.71■□□□□ 0.27
CLN3-212ENST00000564574 ZNF833PQ6ZTB9 187 aa16.71■□□□□ 0.27
CLN3-212ENST00000564574 IL17RELQ6ZVW7 336 aa16.71■□□□□ 0.27
CLN3-212ENST00000564574 TOMM40LQ969M1 308 aa16.71■□□□□ 0.27
CLN3-212ENST00000564574 RPEQ96AT9 228 aa16.71■□□□□ 0.27
CLN3-212ENST00000564574 SETD2Q9BYW2 2564 aaPredicted RBP16.71■□□□□ 0.26
CLN3-212ENST00000564574 GAPDHP04406 335 aaKnown RBP16.7■□□□□ 0.26
CLN3-212ENST00000564574 LDLRAD2Q5SZI1 272 aa16.7■□□□□ 0.26
CLN3-212ENST00000564574 CCDC144NLQ6NUI1 221 aa16.7■□□□□ 0.26
CLN3-212ENST00000564574 MZT2BQ6NZ67 158 aa16.7■□□□□ 0.26
CLN3-212ENST00000564574 SLC38A6Q8IZM9 456 aa16.7■□□□□ 0.26
CLN3-212ENST00000564574 OR13C8Q8NGS7 320 aa16.7■□□□□ 0.26
CLN3-212ENST00000564574 SCGB3A2Q96PL1 93 aa16.7■□□□□ 0.26
CLN3-212ENST00000564574 TBC1D24Q9ULP9 559 aa16.7■□□□□ 0.26
CLN3-212ENST00000564574 FAM96BQ9Y3D0 163 aa16.7■□□□□ 0.26
CLN3-212ENST00000564574 HIVEP2P31629 2446 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms