RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 IFI27L2Q9H2X8 130 aa13.25□□□□□ -0.29
CLK3-210ENST00000563112 C12orf4Q9NQ89 552 aa13.25□□□□□ -0.29
CLK3-210ENST00000563112 AURKAIP1Q9NWT8 199 aaPredicted RBP13.25□□□□□ -0.29
CLK3-210ENST00000563112 KIAA1456Q9P272 454 aa13.25□□□□□ -0.29
CLK3-210ENST00000563112 RAB22AQ9UL26 194 aa13.25□□□□□ -0.29
CLK3-210ENST00000563112 TRAV1-2A0A0B4J238 106 aa13.24□□□□□ -0.29
CLK3-210ENST00000563112 ITGB1BP1O14713 200 aa13.24□□□□□ -0.29
CLK3-210ENST00000563112 ST8SIA5O15466 376 aa13.24□□□□□ -0.29
CLK3-210ENST00000563112 MRPS14O60783 128 aaKnown RBP13.24□□□□□ -0.29
CLK3-210ENST00000563112 SLC2A2P11168 524 aaPredicted RBP13.24□□□□□ -0.29
CLK3-210ENST00000563112 MYL9P24844 172 aa13.24□□□□□ -0.29
CLK3-210ENST00000563112 CEACAM6P40199 344 aa13.24□□□□□ -0.29
CLK3-210ENST00000563112 TMEM50BP56557 158 aa13.24□□□□□ -0.29
CLK3-210ENST00000563112 GABARAPL2P60520 117 aa13.24□□□□□ -0.29
CLK3-210ENST00000563112 HLA-DRB3P79483 266 aa13.24□□□□□ -0.29
CLK3-210ENST00000563112 HES5Q5TA89 166 aa13.24□□□□□ -0.29
CLK3-210ENST00000563112 Q6ZPA2 131 aa13.24□□□□□ -0.29
CLK3-210ENST00000563112 HSPB9Q9BQS6 159 aa13.24□□□□□ -0.29
CLK3-210ENST00000563112 HDHD3Q9BSH5 251 aaPredicted RBP13.24□□□□□ -0.29
CLK3-210ENST00000563112 MCRIP2Q9BUT9 160 aaKnown RBP13.24□□□□□ -0.29
CLK3-210ENST00000563112 FOXI3A8MTJ6 420 aaPredicted RBP13.23□□□□□ -0.29
CLK3-210ENST00000563112 NBR2O15453 112 aa13.23□□□□□ -0.29
CLK3-210ENST00000563112 ATP6V1G2O95670 118 aa13.23□□□□□ -0.29
CLK3-210ENST00000563112 IGF1P05019 195 aa13.23□□□□□ -0.29
CLK3-210ENST00000563112 RPLP1P05386 114 aaKnown RBP13.23□□□□□ -0.29
CLK3-210ENST00000563112 SSX1Q16384 188 aa13.23□□□□□ -0.29
CLK3-210ENST00000563112 ETV3LQ6ZN32 361 aa13.23□□□□□ -0.29
CLK3-210ENST00000563112 C18orf65Q6ZTR6 163 aa13.23□□□□□ -0.29
CLK3-210ENST00000563112 RBMXL1Q96E39 390 aaKnown RBP13.23□□□□□ -0.29
CLK3-210ENST00000563112 Q9H521 79 aa13.23□□□□□ -0.29
CLK3-210ENST00000563112 Q9N2K0 584 aa13.23□□□□□ -0.29
CLK3-210ENST00000563112 NDUFB11Q9NX14 153 aa13.23□□□□□ -0.29
CLK3-210ENST00000563112 ZNF580Q9UK33 172 aa13.23□□□□□ -0.29
CLK3-210ENST00000563112 DNAH3Q8TD57 4116 aa13.23□□□□□ -0.29
CLK3-210ENST00000563112 TMEM272A0A1B0GTI8 110 aa13.22□□□□□ -0.29
CLK3-210ENST00000563112 TRDV1A0A1B0GX56 115 aa13.22□□□□□ -0.29
CLK3-210ENST00000563112 LDLRAD4O15165 306 aa13.22□□□□□ -0.29
CLK3-210ENST00000563112 IGHG4P01861 327 aa13.22□□□□□ -0.29
CLK3-210ENST00000563112 HLA-DRB1P01911 266 aa13.22□□□□□ -0.29
CLK3-210ENST00000563112 CD3GP09693 182 aa13.22□□□□□ -0.29
CLK3-210ENST00000563112 GADD45AP24522 165 aa13.22□□□□□ -0.29
CLK3-210ENST00000563112 MC5RP33032 325 aa13.22□□□□□ -0.29
CLK3-210ENST00000563112 CDX1P47902 265 aaPredicted RBP13.22□□□□□ -0.29
CLK3-210ENST00000563112 C5orf64Q2M2E5 130 aa13.22□□□□□ -0.29
CLK3-210ENST00000563112 RPL39P5Q59GN2 51 aa13.22□□□□□ -0.29
CLK3-210ENST00000563112 LIN54Q6MZP7 749 aa13.22□□□□□ -0.29
CLK3-210ENST00000563112 RAB3CQ96E17 227 aa13.22□□□□□ -0.29
CLK3-210ENST00000563112 ABHD14BQ96IU4 210 aa13.22□□□□□ -0.29
CLK3-210ENST00000563112 RITA1Q96K30 269 aa13.22□□□□□ -0.29
CLK3-210ENST00000563112 KCTD7Q96MP8 289 aa13.22□□□□□ -0.29
CLK3-210ENST00000563112 OR5H14A6NHG9 310 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 IFITM5A6NNB3 132 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 TRDCB7Z8K6 153 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 GSTP1P09211 210 aaKnown RBP13.21□□□□□ -0.29
CLK3-210ENST00000563112 SCTP09683 121 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 RAB3BP20337 219 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 GALP22466 123 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 CNTFRP26992 372 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 TMEM65Q6PI78 240 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 CD200R1LQ6Q8B3 271 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 FAM131AQ6UXB0 335 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 RNF152Q8N8N0 203 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 NPBQ8NG41 125 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 OR8U1Q8NH10 309 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 P2RX4Q99571 388 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 C11orf54Q9H0W9 315 aaPredicted RBP13.21□□□□□ -0.29
CLK3-210ENST00000563112 OR51J1Q9H342 316 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 PARP11Q9NR21 331 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 OR1A1Q9P1Q5 309 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 ZNF221Q9UK13 617 aa13.21□□□□□ -0.29
CLK3-210ENST00000563112 METTL21EPA6NDL7 271 aa13.2□□□□□ -0.3
CLK3-210ENST00000563112 H7C2Y5 167 aa13.2□□□□□ -0.3
CLK3-210ENST00000563112 CCL24O00175 119 aa13.2□□□□□ -0.3
CLK3-210ENST00000563112 RBBP9O75884 186 aa13.2□□□□□ -0.3
CLK3-210ENST00000563112 CT45A6P0DMU7 189 aa13.2□□□□□ -0.3
CLK3-210ENST00000563112 CT45A5P0DMU8 189 aa13.2□□□□□ -0.3
CLK3-210ENST00000563112 CT45A7P0DMV0 189 aa13.2□□□□□ -0.3
CLK3-210ENST00000563112 RAB25P57735 213 aa13.2□□□□□ -0.3
CLK3-210ENST00000563112 CFHR3Q02985 330 aa13.2□□□□□ -0.3
CLK3-210ENST00000563112 KIR2DS1Q14954 304 aa13.2□□□□□ -0.3
CLK3-210ENST00000563112 PLAC9Q5JTB6 97 aa13.2□□□□□ -0.3
CLK3-210ENST00000563112 LCNL1Q6ZST4 164 aa13.2□□□□□ -0.3
CLK3-210ENST00000563112 RAX2Q96IS3 184 aa13.2□□□□□ -0.3
CLK3-210ENST00000563112 AGMATQ9BSE5 352 aa13.2□□□□□ -0.3
CLK3-210ENST00000563112 YTHDF1Q9BYJ9 559 aaKnown RBP13.2□□□□□ -0.3
CLK3-210ENST00000563112 PARP12Q9H0J9 701 aaKnown RBP13.2□□□□□ -0.3
CLK3-210ENST00000563112 ZMAT5Q9UDW3 170 aaKnown RBP13.2□□□□□ -0.3
CLK3-210ENST00000563112 WASHC3Q9Y3C0 194 aa13.2□□□□□ -0.3
CLK3-210ENST00000563112 WSB1Q9Y6I7 421 aa13.2□□□□□ -0.3
CLK3-210ENST00000563112 IGHV7-81A0A0B4J1V7 117 aa13.19□□□□□ -0.3
CLK3-210ENST00000563112 ATP6V0E1O15342 81 aa13.19□□□□□ -0.3
CLK3-210ENST00000563112 NDUFA3O95167 84 aa13.19□□□□□ -0.3
CLK3-210ENST00000563112 RAB6AP20340 208 aa13.19□□□□□ -0.3
CLK3-210ENST00000563112 SERPINB10P48595 397 aa13.19□□□□□ -0.3
CLK3-210ENST00000563112 OR10A3P58181 314 aa13.19□□□□□ -0.3
CLK3-210ENST00000563112 PLGLAQ15195 96 aa13.19□□□□□ -0.3
CLK3-210ENST00000563112 C22orf42Q6IC83 251 aa13.19□□□□□ -0.3
CLK3-210ENST00000563112 GLDNQ6ZMI3 551 aaPredicted RBP13.19□□□□□ -0.3
CLK3-210ENST00000563112 OR4A4PQ8NGN8 299 aa13.19□□□□□ -0.3
CLK3-210ENST00000563112 OR10R2Q8NGX6 335 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms