RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 SLC25A33Q9BSK2 321 aa13.38□□□□□ -0.27
CLK3-207ENST00000562389 PARP12Q9H0J9 701 aaKnown RBP13.38□□□□□ -0.27
CLK3-207ENST00000562389 C11orf54Q9H0W9 315 aaPredicted RBP13.38□□□□□ -0.27
CLK3-207ENST00000562389 GHITMQ9H3K2 345 aa13.38□□□□□ -0.27
CLK3-207ENST00000562389 RDH8Q9NYR8 311 aa13.38□□□□□ -0.27
CLK3-207ENST00000562389 SAA2-SAA4A0A096LPE2 208 aa13.37□□□□□ -0.27
CLK3-207ENST00000562389 RAB29O14966 203 aa13.37□□□□□ -0.27
CLK3-207ENST00000562389 BET1O15155 118 aa13.37□□□□□ -0.27
CLK3-207ENST00000562389 NOL3O60936 208 aaKnown RBP13.37□□□□□ -0.27
CLK3-207ENST00000562389 IGKV1D-33P01593 117 aa13.37□□□□□ -0.27
CLK3-207ENST00000562389 IGKV1-33P01594 117 aa13.37□□□□□ -0.27
CLK3-207ENST00000562389 SAA2P0DJI9 122 aaPredicted RBP13.37□□□□□ -0.27
CLK3-207ENST00000562389 CD1BP29016 333 aa13.37□□□□□ -0.27
CLK3-207ENST00000562389 EBI3Q14213 229 aa13.37□□□□□ -0.27
CLK3-207ENST00000562389 TMEM69Q5SWH9 247 aa13.37□□□□□ -0.27
CLK3-207ENST00000562389 C3orf56Q8N813 242 aa13.37□□□□□ -0.27
CLK3-207ENST00000562389 OR10J5Q8NHC4 309 aa13.37□□□□□ -0.27
CLK3-207ENST00000562389 ST6GALNAC5Q9BVH7 336 aa13.37□□□□□ -0.27
CLK3-207ENST00000562389 RNF114Q9Y508 228 aa13.37□□□□□ -0.27
CLK3-207ENST00000562389 TMEM11P17152 192 aa13.36□□□□□ -0.27
CLK3-207ENST00000562389 SOX6P35712 828 aa13.36□□□□□ -0.27
CLK3-207ENST00000562389 OR3A3P47888 321 aa13.36□□□□□ -0.27
CLK3-207ENST00000562389 TAS2R20P59543 309 aa13.36□□□□□ -0.27
CLK3-207ENST00000562389 HES1Q14469 280 aa13.36□□□□□ -0.27
CLK3-207ENST00000562389 Q8N2B8 174 aa13.36□□□□□ -0.27
CLK3-207ENST00000562389 ISOC1Q96CN7 298 aa13.36□□□□□ -0.27
CLK3-207ENST00000562389 ZNF747Q9BV97 191 aa13.36□□□□□ -0.27
CLK3-207ENST00000562389 ZNF702PQ9H963 129 aa13.36□□□□□ -0.27
CLK3-207ENST00000562389 IGHV3-72A0A0B4J1Y9 119 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 H3BMQ9 156 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 HPGDSO60760 199 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 CTXN2P0C2S0 81 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 CBX5P45973 191 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 PROK1P58294 105 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 LSAMPQ13449 338 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 CNIH2Q6PI25 160 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 HOGA1Q86XE5 327 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 H1FOOQ8IZA3 346 aaPredicted RBP13.35□□□□□ -0.27
CLK3-207ENST00000562389 OR2T6Q8NHC8 308 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 DYNC2LI1Q8TCX1 351 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 WFDC12Q8WWY7 111 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 ABHD14BQ96IU4 210 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 S1PR3Q99500 378 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 ZNF251Q9BRH9 671 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 GINS4Q9BRT9 223 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 MRPL20Q9BYC9 149 aaKnown RBP13.35□□□□□ -0.27
CLK3-207ENST00000562389 PRSS22Q9GZN4 317 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 CCDC59Q9P031 241 aaKnown RBP13.35□□□□□ -0.27
CLK3-207ENST00000562389 ANXA10Q9UJ72 324 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 MOB4Q9Y3A3 225 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 CEPT1Q9Y6K0 416 aa13.35□□□□□ -0.27
CLK3-207ENST00000562389 M0QZK8 103 aa13.34□□□□□ -0.27
CLK3-207ENST00000562389 PTHLHP12272 177 aa13.34□□□□□ -0.27
CLK3-207ENST00000562389 ELK1P19419 428 aa13.34□□□□□ -0.27
CLK3-207ENST00000562389 RPL39P5Q59GN2 51 aa13.34□□□□□ -0.27
CLK3-207ENST00000562389 C11orf88Q6PI97 169 aa13.34□□□□□ -0.27
CLK3-207ENST00000562389 Q8N6K4 173 aa13.34□□□□□ -0.27
CLK3-207ENST00000562389 BEST4Q8NFU0 473 aa13.34□□□□□ -0.27
CLK3-207ENST00000562389 OR2T10Q8NGZ9 312 aa13.34□□□□□ -0.27
CLK3-207ENST00000562389 EAF1Q96JC9 268 aaPredicted RBP13.34□□□□□ -0.27
CLK3-207ENST00000562389 NABP2Q9BQ15 211 aa13.34□□□□□ -0.27
CLK3-207ENST00000562389 SMIM31A0A1B0GVY4 71 aa13.33□□□□□ -0.28
CLK3-207ENST00000562389 ZNF736B4DX44 427 aaPredicted RBP13.33□□□□□ -0.28
CLK3-207ENST00000562389 FGF16O43320 207 aa13.33□□□□□ -0.28
CLK3-207ENST00000562389 MOSP00540 346 aa13.33□□□□□ -0.28
CLK3-207ENST00000562389 AMY1AP04745 511 aa13.33□□□□□ -0.28
CLK3-207ENST00000562389 AMY2AP04746 511 aa13.33□□□□□ -0.28
CLK3-207ENST00000562389 GPR12P47775 334 aa13.33□□□□□ -0.28
CLK3-207ENST00000562389 BLCAPP62952 87 aa13.33□□□□□ -0.28
CLK3-207ENST00000562389 GVQW1Q8N7I0 195 aa13.33□□□□□ -0.28
CLK3-207ENST00000562389 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.33□□□□□ -0.28
CLK3-207ENST00000562389 ZNF221Q9UK13 617 aa13.33□□□□□ -0.28
CLK3-207ENST00000562389 GAB2Q9UQC2 676 aa13.33□□□□□ -0.28
CLK3-207ENST00000562389 FAM25AB3EWG3 89 aa13.32□□□□□ -0.28
CLK3-207ENST00000562389 FAM25CB3EWG5 89 aa13.32□□□□□ -0.28
CLK3-207ENST00000562389 FAM25GB3EWG6 89 aa13.32□□□□□ -0.28
CLK3-207ENST00000562389 HLA-DQB1P01920 261 aa13.32□□□□□ -0.28
CLK3-207ENST00000562389 HNF4GQ14541 408 aa13.32□□□□□ -0.28
CLK3-207ENST00000562389 SHISA2Q6UWI4 295 aa13.32□□□□□ -0.28
CLK3-207ENST00000562389 RBM38Q9H0Z9 239 aaKnown RBP13.32□□□□□ -0.28
CLK3-207ENST00000562389 OR2D2Q9H210 308 aa13.32□□□□□ -0.28
CLK3-207ENST00000562389 RNF150Q9ULK6 438 aa13.32□□□□□ -0.28
CLK3-207ENST00000562389 ANAPC10Q9UM13 185 aa13.32□□□□□ -0.28
CLK3-207ENST00000562389 SIGLEC9Q9Y336 463 aa13.32□□□□□ -0.28
CLK3-207ENST00000562389 STAB1Q9NY15 2570 aa13.31□□□□□ -0.28
CLK3-207ENST00000562389 OR5H14A6NHG9 310 aa13.31□□□□□ -0.28
CLK3-207ENST00000562389 PROP1O75360 226 aa13.31□□□□□ -0.28
CLK3-207ENST00000562389 OR8U9P0C7N5 309 aa13.31□□□□□ -0.28
CLK3-207ENST00000562389 CT45A6P0DMU7 189 aa13.31□□□□□ -0.28
CLK3-207ENST00000562389 CT45A5P0DMU8 189 aa13.31□□□□□ -0.28
CLK3-207ENST00000562389 CT45A7P0DMV0 189 aa13.31□□□□□ -0.28
CLK3-207ENST00000562389 PRSS3P35030 304 aa13.31□□□□□ -0.28
CLK3-207ENST00000562389 ARPC4P59998 168 aa13.31□□□□□ -0.28
CLK3-207ENST00000562389 ABCA11PQ4W5N1 156 aa13.31□□□□□ -0.28
CLK3-207ENST00000562389 Q6ZS46 218 aa13.31□□□□□ -0.28
CLK3-207ENST00000562389 C5orf56Q8N8D9 126 aa13.31□□□□□ -0.28
CLK3-207ENST00000562389 OR8H1Q8NGG4 311 aa13.31□□□□□ -0.28
CLK3-207ENST00000562389 OR8U1Q8NH10 309 aa13.31□□□□□ -0.28
CLK3-207ENST00000562389 SNAPC3Q92966 411 aa13.31□□□□□ -0.28
CLK3-207ENST00000562389 IFT46Q9NQC8 304 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms