RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ZNF826PQ6ZT77 177 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 LYZL2Q7Z4W2 148 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 MUC15Q8N387 334 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 STPG2Q8N412 459 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 PRR18Q8N4B5 295 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 OR2C3Q8N628 320 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 DRAM1Q8N682 238 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 OR8U1Q8NH10 309 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 OR4S2Q8NH73 311 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 MRGPRDQ8TDS7 321 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 OR10C1Q96KK4 312 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 WFIKKN1Q96NZ8 548 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 TMEM204Q9BSN7 226 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 ABHD14AQ9BUJ0 271 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 RNF126Q9BV68 326 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 PARD6GQ9BYG4 376 aaPredicted RBP6.28□□□□□ -1.4
VPS39-204ENST00000561818 SMDT1Q9H4I9 107 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 CCL28Q9NRJ3 127 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 KCNIP2Q9NS61 270 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.28□□□□□ -1.4
VPS39-204ENST00000561818 GFOD1Q9NXC2 390 aa6.28□□□□□ -1.4
VPS39-204ENST00000561818 HEATR1Q9H583 2144 aaKnown RBP6.28□□□□□ -1.4
VPS39-204ENST00000561818 TLN1Q9Y490 2541 aaKnown RBP6.27□□□□□ -1.41
VPS39-204ENST00000561818 IGKV1D-13A0A0B4J2D9 117 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 IGHV1-69-2A0A0G2JMI3 117 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 RPS10-NUDT3A0A1W2PQS6 291 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 C15orf65H3BRN8 121 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 WNT9BO14905 357 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 ADAM20O43506 726 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 CLDN1O95832 211 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 HRASP01112 189 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 IGKV1-13P0DP09 117 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 HKR1P10072 659 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 RAB13P51153 203 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 EDDM3AQ14507 147 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 RTL8BQ17RB0 113 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 SWI5Q1ZZU3 235 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 SP6Q3SY56 376 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 MORN2Q502X0 79 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 Q6ZPA2 131 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 LRP11Q86VZ4 500 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 SPAG16Q8N0X2 631 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 PUSL1Q8N0Z8 303 aaKnown RBP6.27□□□□□ -1.41
VPS39-204ENST00000561818 CD177Q8N6Q3 437 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 OR52E5Q8NH55 327 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 VSTM2AQ8TAG5 236 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 TCTEX1D2Q8WW35 142 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 PINX1Q96BK5 328 aaKnown RBP6.27□□□□□ -1.41
VPS39-204ENST00000561818 TSNAXQ99598 290 aaKnown RBP6.27□□□□□ -1.41
VPS39-204ENST00000561818 CBLN4Q9NTU7 201 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 FKBP11Q9NYL4 201 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 IDI2-AS1Q9NZ38 188 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 CISD1Q9NZ45 108 aaKnown RBP6.27□□□□□ -1.41
VPS39-204ENST00000561818 ZNF581Q9P0T4 197 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 OR1A1Q9P1Q5 309 aa6.27□□□□□ -1.41
VPS39-204ENST00000561818 SLC25A10Q9UBX3 287 aaPredicted RBP6.27□□□□□ -1.41
VPS39-204ENST00000561818 LSM5Q9Y4Y9 91 aaKnown RBP6.27□□□□□ -1.41
VPS39-204ENST00000561818 FAM90A27PA6NNH2 459 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 TMPRSS2O15393 492 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 ZNHIT1O43257 154 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 SYNGR2O43760 224 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 IFNA5P01569 189 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 APOA2P02652 100 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 OR8U8P0C7N1 319 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 C1QTNF9P0C862 333 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 NQO2P16083 231 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 TAGLN2P37802 199 aaKnown RBP6.26□□□□□ -1.41
VPS39-204ENST00000561818 GLIPR1P48060 266 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 SULT1A1P50225 295 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 CAV2P51636 162 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 F2RL1P55085 397 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 RPL31P62899 125 aaKnown RBP6.26□□□□□ -1.41
VPS39-204ENST00000561818 AARDQ4LEZ3 155 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 TMEM155Q4W5P6 130 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 PDLIM3Q53GG5 364 aaPredicted RBP6.26□□□□□ -1.41
VPS39-204ENST00000561818 PRR30Q53SZ7 412 aaPredicted RBP6.26□□□□□ -1.41
VPS39-204ENST00000561818 ALKAL2Q6UX46 152 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 HEPN1Q6WQI6 88 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 H2BFWTQ7Z2G1 175 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 COMMD7Q86VX2 200 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 FOXRED2Q8IWF2 684 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 CCDC28AQ8IWP9 274 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 BATF2Q8N1L9 274 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 OR1S2Q8NGQ3 325 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 OR13A1Q8NGR1 328 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 RAB1CQ92928 201 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 SMIM8Q96KF7 97 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 ZNF714Q96N38 554 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 GAFA1Q96PS6 74 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 PCGF1Q9BSM1 259 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 OR5AC2Q9NZP5 309 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 MIOXQ9UGB7 285 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 RPUSD1Q9UJJ7 312 aaKnown RBP6.26□□□□□ -1.41
VPS39-204ENST00000561818 AMMECR1Q9Y4X0 333 aaPredicted RBP6.26□□□□□ -1.41
VPS39-204ENST00000561818 ZGRF1Q86YA3 2104 aa6.26□□□□□ -1.41
VPS39-204ENST00000561818 SHANK1Q9Y566 2161 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 NKX2-6A6NCS4 301 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 E7EQL1 145 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 H0YIZ8 118 aa6.25□□□□□ -1.41
VPS39-204ENST00000561818 HBE1P02100 147 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms