RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	GADD45A	P24522	165 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	MYL9	P24844	172 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	CALR	P27797	417 aa	Known RBP	11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	CD40LG	P29965	261 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	RAB25	P57735	213 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	HLA-DRB3	P79483	266 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	DGCR2	P98153	550 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	TMEM267	Q0VDI3	215 aa	Predicted RBP	11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	ARL6IP1	Q15041	203 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	PLGLA	Q15195	96 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	P2RY14	Q15391	338 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	TBCE	Q15813	527 aa	Predicted RBP	11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	C9orf66	Q5T8R8	295 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	OR10K2	Q6IF99	312 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	PYHIN1	Q6K0P9	492 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	LIN54	Q6MZP7	749 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	ZNF880	Q6PDB4	577 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	ZNF367	Q7RTV3	350 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	KCTD7	Q96MP8	289 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	IFI27L2	Q9H2X8	130 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	OR51J1	Q9H342	316 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445		Q9H521	79 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	ZNF221	Q9UK13	617 aa		11.06	□□□□□ -0.64
TPM1-223	ENST00000560445	APOA2	P02652	100 aa		11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	GSTP1	P09211	210 aa	Known RBP	11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	OR8U8	P0C7N1	319 aa		11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	SLC2A2	P11168	524 aa	Predicted RBP	11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	PSMB8	P28062	276 aa		11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	F2RL1	P55085	397 aa		11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	QRFP	P83859	136 aa		11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	CFHR3	Q02985	330 aa		11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	CBX3	Q13185	183 aa		11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	C5orf64	Q2M2E5	130 aa		11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	DEFB121	Q5J5C9	76 aa		11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	ZNF660	Q6AZW8	331 aa	Predicted RBP	11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	FAM89B	Q8N5H3	189 aa		11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	NPB	Q8NG41	125 aa		11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	RAX2	Q96IS3	184 aa		11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	UBE2E2	Q96LR5	201 aa		11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	CMSS1	Q9BQ75	279 aa	Known RBP	11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	LPAR5	Q9H1C0	372 aa		11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	PARP11	Q9NR21	331 aa		11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	WASHC3	Q9Y3C0	194 aa		11.05	□□□□□ -0.64
TPM1-223	ENST00000560445		V9GY05	133 aa		11.05	□□□□□ -0.64
TPM1-223	ENST00000560445	TRAV41	A0A0B4J266	112 aa		11.04	□□□□□ -0.64
TPM1-223	ENST00000560445		H7C2Y5	167 aa		11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	MRPS14	O60783	128 aa	Known RBP	11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	NDUFA3	O95167	84 aa		11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	SPDEF	O95238	335 aa		11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	DIRAS3	O95661	229 aa		11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	CD3G	P09693	182 aa		11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	GAL	P22466	123 aa		11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	INSL3	P51460	131 aa		11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	RPS25	P62851	125 aa	Known RBP	11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	FAM53A	Q6NSI3	398 aa	Predicted RBP	11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	TMEM91	Q6ZNR0	172 aa		11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	LCNL1	Q6ZST4	164 aa		11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	ODF3L1	Q8IXM7	274 aa		11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	FAM3D	Q96BQ1	224 aa		11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	TSNAX	Q99598	290 aa	Known RBP	11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	HSPB9	Q9BQS6	159 aa		11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	NICN1	Q9BSH3	213 aa		11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	AK3	Q9UIJ7	227 aa		11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	RAB22A	Q9UL26	194 aa		11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	VSIG4	Q9Y279	399 aa		11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	AK6	Q9Y3D8	172 aa	Known RBP	11.04	□□□□□ -0.64
TPM1-223	ENST00000560445	TRAV1-2	A0A0B4J238	106 aa		11.03	□□□□□ -0.64
TPM1-223	ENST00000560445	METTL21EP	A6NDL7	271 aa		11.03	□□□□□ -0.64
TPM1-223	ENST00000560445		K7EIL1	84 aa		11.03	□□□□□ -0.64
TPM1-223	ENST00000560445	RRH	O14718	337 aa		11.03	□□□□□ -0.64
TPM1-223	ENST00000560445	ARPC1B	O15143	372 aa	Known RBP	11.03	□□□□□ -0.64
TPM1-223	ENST00000560445	DENR	O43583	198 aa	Known RBP	11.03	□□□□□ -0.64
TPM1-223	ENST00000560445	HOXD3	P31249	432 aa	Predicted RBP	11.03	□□□□□ -0.64
TPM1-223	ENST00000560445	CEACAM6	P40199	344 aa		11.03	□□□□□ -0.64
TPM1-223	ENST00000560445	MAP2K4	P45985	399 aa		11.03	□□□□□ -0.64
TPM1-223	ENST00000560445	OR3A3	P47888	321 aa		11.03	□□□□□ -0.64
TPM1-223	ENST00000560445	RUNX1	Q01196	453 aa		11.03	□□□□□ -0.64
TPM1-223	ENST00000560445	TAGLN	Q01995	201 aa	Known RBP	11.03	□□□□□ -0.64
TPM1-223	ENST00000560445	FAM131A	Q6UXB0	335 aa		11.03	□□□□□ -0.64
TPM1-223	ENST00000560445	OR4A4P	Q8NGN8	299 aa		11.03	□□□□□ -0.64
TPM1-223	ENST00000560445	PTX4	Q96A99	478 aa		11.03	□□□□□ -0.64
TPM1-223	ENST00000560445		Q9N2K0	584 aa		11.03	□□□□□ -0.64
TPM1-223	ENST00000560445	LINC01548	A6NM66	108 aa		11.02	□□□□□ -0.65
TPM1-223	ENST00000560445	TRDC	B7Z8K6	153 aa		11.02	□□□□□ -0.65
TPM1-223	ENST00000560445	ATP6V0E1	O15342	81 aa		11.02	□□□□□ -0.65
TPM1-223	ENST00000560445	ST8SIA5	O15466	376 aa		11.02	□□□□□ -0.65
TPM1-223	ENST00000560445	SOCS1	O15524	211 aa		11.02	□□□□□ -0.65
TPM1-223	ENST00000560445	ATP6V1G2	O95670	118 aa		11.02	□□□□□ -0.65
TPM1-223	ENST00000560445	VEGFC	P49767	419 aa		11.02	□□□□□ -0.65
TPM1-223	ENST00000560445	FABP5	Q01469	135 aa		11.02	□□□□□ -0.65
TPM1-223	ENST00000560445	CD69	Q07108	199 aa		11.02	□□□□□ -0.65
TPM1-223	ENST00000560445	PDPN	Q86YL7	162 aa		11.02	□□□□□ -0.65
TPM1-223	ENST00000560445	OR5AN1	Q8NGI8	311 aa		11.02	□□□□□ -0.65
TPM1-223	ENST00000560445	MYOZ3	Q8TDC0	251 aa		11.02	□□□□□ -0.65
TPM1-223	ENST00000560445	ABHD5	Q8WTS1	349 aa		11.02	□□□□□ -0.65
TPM1-223	ENST00000560445	RAB3C	Q96E17	227 aa		11.02	□□□□□ -0.65
TPM1-223	ENST00000560445	FOXA2	Q9Y261	457 aa	Predicted RBP	11.02	□□□□□ -0.65
TPM1-223	ENST00000560445	IGHV7-81	A0A0B4J1V7	117 aa		11.01	□□□□□ -0.65
TPM1-223	ENST00000560445	SEC14L6	B5MCN3	397 aa		11.01	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms