RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 SNX29P2Q8IUI4 249 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 GVQW1Q8N7I0 195 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 C3orf56Q8N813 242 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 ST6GALNAC6Q969X2 333 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 AKR1E2Q96JD6 320 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 S1PR3Q99500 378 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 SLC25A33Q9BSK2 321 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 CABLES2Q9BTV7 478 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 IFI27L2Q9H2X8 130 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 BEX1Q9HBH7 125 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 IFT46Q9NQC8 304 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 PIPOXQ9P0Z9 390 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 EXTL2Q9UBQ6 330 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 ZNF221Q9UK13 617 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 MXRA5Q9NR99 2828 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 ATRQ13535 2644 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 TRBV6-7A0A0A0MS04 114 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 J3QRK9 145 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 HAX1O00165 279 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 ITGB1BP1O14713 200 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 RAB29O14966 203 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 LANCL1O43813 399 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 NDUFA7O95182 113 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 CTXN2P0C2S0 81 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 OR8U9P0C7N5 309 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 PRSS3P35030 304 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 CBX5P45973 191 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 GPR12P47775 334 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 ZNF137PP52743 207 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 RPL39P5Q59GN2 51 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 ARSJQ5FYB0 599 aaPredicted RBP9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 HOGA1Q86XE5 327 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 ODF3L1Q8IXM7 274 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 BEST4Q8NFU0 473 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 OR8U1Q8NH10 309 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 SPATA3Q8NHX4 192 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 DYNC2LI1Q8TCX1 351 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 CFHR4Q92496 578 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 C6orf62Q9GZU0 229 aaPredicted RBP9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 CCDC59Q9P031 241 aaKnown RBP9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 RSL24D1Q9UHA3 163 aaKnown RBP9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 ANXA10Q9UJ72 324 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 ADAM30Q9UKF2 790 aa9.18□□□□□ -0.94
CCDC88C-212ENST00000556767 CLPSL1A2RUU4 121 aa9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 ZNF736B4DX44 427 aaPredicted RBP9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 CTDSP2O14595 271 aa9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 OR2F2O95006 317 aa9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 DIRAS3O95661 229 aa9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 FBLN7Q53RD9 439 aa9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 RNASE12Q5GAN4 147 aaKnown RBP9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 C9orf152Q5JTZ5 239 aa9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 CNIH2Q6PI25 160 aa9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 ZNF833PQ6ZTB9 187 aa9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 C16orf82Q7Z2V1 217 aa9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 THNSL2Q86YJ6 484 aa9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 H1FOOQ8IZA3 346 aaPredicted RBP9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 OR2T10Q8NGZ9 312 aa9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 OR2T6Q8NHC8 308 aa9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 RBM14Q96PK6 669 aaKnown RBP9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 DCUN1D5Q9BTE7 237 aa9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 MRPL20Q9BYC9 149 aaKnown RBP9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 OR2D2Q9H210 308 aa9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 GHITMQ9H3K2 345 aa9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 SIGLEC9Q9Y336 463 aa9.17□□□□□ -0.94
CCDC88C-212ENST00000556767 A0A1B0GUS0 222 aa9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 FAM90A9PA6NNJ1 464 aa9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 NCBP2LA6PVI3 153 aaKnown RBP9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 TSPAN9O75954 239 aa9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 HLA-DQB1P01920 261 aa9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 NFYAP23511 347 aaPredicted RBP9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 CD1BP29016 333 aa9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 COMPP49747 757 aaPredicted RBP9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 BLCAPP62952 87 aa9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 LSAMPQ13449 338 aa9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 GLDNQ6ZMI3 551 aaPredicted RBP9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 LAX1Q8IWV1 398 aa9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 MCFD2Q8NI22 146 aa9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 LINC01006Q8NI28 216 aa9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 RBMXL1Q96E39 390 aaKnown RBP9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 EAF1Q96JC9 268 aaPredicted RBP9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 NABP2Q9BQ15 211 aa9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 AGMATQ9BSE5 352 aa9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 PRSS22Q9GZN4 317 aa9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 RANBP3Q9H6Z4 567 aaPredicted RBP9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 NECAP2Q9NVZ3 263 aa9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 MOB4Q9Y3A3 225 aa9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 RNF114Q9Y508 228 aa9.16□□□□□ -0.94
CCDC88C-212ENST00000556767 SH2D7A6NKC9 451 aaPredicted RBP9.15□□□□□ -0.94
CCDC88C-212ENST00000556767 H7C2Y5 167 aa9.15□□□□□ -0.94
CCDC88C-212ENST00000556767 M0R1X1 148 aa9.15□□□□□ -0.94
CCDC88C-212ENST00000556767 PEX14O75381 377 aa9.15□□□□□ -0.94
CCDC88C-212ENST00000556767 MOSP00540 346 aa9.15□□□□□ -0.94
CCDC88C-212ENST00000556767 LUMP51884 338 aaPredicted RBP9.15□□□□□ -0.94
CCDC88C-212ENST00000556767 HABP2Q14520 560 aaPredicted RBP9.15□□□□□ -0.94
CCDC88C-212ENST00000556767 ABCA11PQ4W5N1 156 aa9.15□□□□□ -0.94
CCDC88C-212ENST00000556767 FAM71F2Q6NXP2 309 aa9.15□□□□□ -0.94
CCDC88C-212ENST00000556767 DRAXINQ8NBI3 349 aaPredicted RBP9.15□□□□□ -0.94
CCDC88C-212ENST00000556767 DIRAS2Q96HU8 199 aa9.15□□□□□ -0.94
CCDC88C-212ENST00000556767 ZNF251Q9BRH9 671 aa9.15□□□□□ -0.94
CCDC88C-212ENST00000556767 TOLLIPQ9H0E2 274 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms