RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 ZC3H13Q5T200 1668 aaKnown RBP3.44□□□□□ -1.86
LIMA1-210ENST00000552045 GLI3P10071 1580 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 A0A1W2PNU3 283 aaPredicted RBP3.44□□□□□ -1.86
LIMA1-210ENST00000552045 B4DEV8 164 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 H3BQ85 93 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 PFDN6O15212 129 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 TYMSP04818 313 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 LINC00614P0C842 121 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 ZNF14P17017 642 aaPredicted RBP3.44□□□□□ -1.86
LIMA1-210ENST00000552045 PSMA1P25786 263 aaKnown RBP3.44□□□□□ -1.86
LIMA1-210ENST00000552045 MIPP30301 263 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 GABARAPL2P60520 117 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 IGFL1Q6UW32 110 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 RPRMLQ8N4K4 120 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 C3orf22Q8N5N4 141 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 TMEM75Q8N9X5 138 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 OR10D3Q8NH80 312 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 OR2V2Q96R30 315 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 TRIB3Q96RU7 358 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 CDCA4Q9BXL8 241 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 PARD6GQ9BYG4 376 aaPredicted RBP3.44□□□□□ -1.86
LIMA1-210ENST00000552045 GTSF1LQ9H1H1 148 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 PARVAQ9NVD7 372 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 LINC00527Q9UJ94 153 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 RGPD1P0DJD0 1748 aa3.44□□□□□ -1.86
LIMA1-210ENST00000552045 MAST1Q9Y2H9 1570 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 ABCC11Q96J66 1382 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 IGHV3OR15-7A0A075B7D8 119 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 LRRN3E7EW58 273 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 HBZP02008 142 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 GYPCP04921 128 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 PSMB3P49720 205 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 DAD1P61803 113 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 ITGB3BPQ13352 177 aaPredicted RBP3.43□□□□□ -1.86
LIMA1-210ENST00000552045 MESTQ5EB52 335 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 OGFRL1Q5TC84 451 aaPredicted RBP3.43□□□□□ -1.86
LIMA1-210ENST00000552045 CST9Q5W186 159 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 CYHR1Q6ZMK1 362 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 Q6ZRU5 148 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 NATD1Q8N6N6 113 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 ZNF680Q8NEM1 530 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 TIPINQ9BVW5 301 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 C11orf49Q9H6J7 331 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 KCNIP2Q9NS61 270 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 ARHGAP5Q13017 1502 aa3.43□□□□□ -1.86
LIMA1-210ENST00000552045 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.42□□□□□ -1.86
LIMA1-210ENST00000552045 A0A0B4J2C4 111 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 A6NED7 52 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 H3BMM0 161 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 H3BSA7 217 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 CXCR6O00574 342 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 INAFM2P0DMQ5 153 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 KLF3P57682 345 aaPredicted RBP3.42□□□□□ -1.86
LIMA1-210ENST00000552045 BIKQ13323 160 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 BCL2A1Q16548 175 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 Q6ZQT7 251 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 OR11G2Q8NGC1 345 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 OR8J2Q8NGG1 315 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 OR1P1Q8NH06 330 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 OR51H1Q8NH63 302 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 PIGXQ8TBF5 258 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 UBE2WQ96B02 151 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 EBNA1BP2Q99848 306 aaKnown RBP3.42□□□□□ -1.86
LIMA1-210ENST00000552045 DERL2Q9GZP9 239 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 ZNF286AQ9HBT8 521 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 PDE4DIPQ5VU43 2346 aa3.42□□□□□ -1.86
LIMA1-210ENST00000552045 A0A1W2PP64 1363 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 C21orf140B9A014 251 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 ATP5G1P05496 136 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 GUSBP08236 651 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 FBP1P09467 338 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 ORM2P19652 201 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 CXCL3P19876 107 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 PRPS1L1P21108 318 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 RPS11P62280 158 aaKnown RBP eCLIP3.41□□□□□ -1.86
LIMA1-210ENST00000552045 NIT1Q86X76 327 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 ZNF565Q8N9K5 539 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 C1orf64Q8NEQ6 169 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 HAVCR2Q8TDQ0 301 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 TLCD1Q96CP7 247 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 RTBDNQ9BSG5 229 aaPredicted RBP3.41□□□□□ -1.86
LIMA1-210ENST00000552045 BCL2L14Q9BZR8 327 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 OR51B6Q9H340 312 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 MAP1LC3AQ9H492 121 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 PHLDA3Q9Y5J5 127 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 GPR179Q6PRD1 2367 aa3.41□□□□□ -1.86
LIMA1-210ENST00000552045 SLIT2O94813 1529 aa3.4□□□□□ -1.86
LIMA1-210ENST00000552045 EFCAB6Q5THR3 1501 aa3.4□□□□□ -1.86
LIMA1-210ENST00000552045 IGKV1-12A0A0C4DH73 117 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 K7EQS6 105 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 COPEO14579 308 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 IGKV1D-12P01611 117 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 IGHV3-53P01767 116 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 CRYBA1P05813 215 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 CXCL2P19875 107 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 GABRA3P34903 492 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 DCCP43146 1447 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 SPIN4Q56A73 249 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 PRR9Q5T870 116 aa3.4□□□□□ -1.87
LIMA1-210ENST00000552045 ZNF660Q6AZW8 331 aaPredicted RBP3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms