RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 CREB3L1Q96BA8 519 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 MALSU1Q96EH3 234 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 OCEL1Q9H607 264 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 OR2W1Q9Y3N9 320 aa17.14■□□□□ 0.33
VPS29-206ENST00000549578 AADACP22760 399 aa17.13■□□□□ 0.33
VPS29-206ENST00000549578 CEACAM3P40198 252 aa17.13■□□□□ 0.33
VPS29-206ENST00000549578 REG1BP48304 166 aa17.13■□□□□ 0.33
VPS29-206ENST00000549578 RNASE10Q5GAN6 216 aaKnown RBP17.13■□□□□ 0.33
VPS29-206ENST00000549578 STEAP1BQ6NZ63 245 aa17.13■□□□□ 0.33
VPS29-206ENST00000549578 LURAP1LQ8IV03 231 aa17.13■□□□□ 0.33
VPS29-206ENST00000549578 SIGLECL1Q8N7X8 197 aa17.13■□□□□ 0.33
VPS29-206ENST00000549578 TOMM40LQ969M1 308 aa17.13■□□□□ 0.33
VPS29-206ENST00000549578 ST6GALNAC6Q969X2 333 aa17.13■□□□□ 0.33
VPS29-206ENST00000549578 RPEQ96AT9 228 aa17.13■□□□□ 0.33
VPS29-206ENST00000549578 TAS2R8Q9NYW2 309 aa17.13■□□□□ 0.33
VPS29-206ENST00000549578 ZNF107Q9UII5 783 aaPredicted RBP17.13■□□□□ 0.33
VPS29-206ENST00000549578 RBM7Q9Y580 266 aaKnown RBP17.13■□□□□ 0.33
VPS29-206ENST00000549578 SAA2-SAA4A0A096LPE2 208 aa17.12■□□□□ 0.33
VPS29-206ENST00000549578 ANKRD20A5PA0PJZ0 165 aa17.12■□□□□ 0.33
VPS29-206ENST00000549578 HSD17B6O14756 317 aa17.12■□□□□ 0.33
VPS29-206ENST00000549578 CD74P04233 296 aa17.12■□□□□ 0.33
VPS29-206ENST00000549578 SAA2P0DJI9 122 aaPredicted RBP17.12■□□□□ 0.33
VPS29-206ENST00000549578 IL3RAP26951 378 aa17.12■□□□□ 0.33
VPS29-206ENST00000549578 TUSC1Q2TAM9 212 aa17.12■□□□□ 0.33
VPS29-206ENST00000549578 VAX1Q5SQQ9 334 aa17.12■□□□□ 0.33
VPS29-206ENST00000549578 FAAP20Q6NZ36 180 aa17.12■□□□□ 0.33
VPS29-206ENST00000549578 OR2D2Q9H210 308 aa17.12■□□□□ 0.33
VPS29-206ENST00000549578 CUBNO60494 3623 aa17.12■□□□□ 0.33
VPS29-206ENST00000549578 IGKV1D-13A0A0B4J2D9 117 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 RAB3DO95716 219 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 PPYP01298 95 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 IGKV1-13P0DP09 117 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 TBPP20226 339 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 ZNF137PP52743 207 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 ZNF660Q6AZW8 331 aaPredicted RBP17.11■□□□□ 0.33
VPS29-206ENST00000549578 GIMAP1Q8WWP7 306 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 ZDHHC16Q969W1 377 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 ZNF2Q9BSG1 426 aaPredicted RBP17.11■□□□□ 0.33
VPS29-206ENST00000549578 RAB29O14966 203 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 GPR12P47775 334 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 LUMP51884 338 aaPredicted RBP17.11■□□□□ 0.33
VPS29-206ENST00000549578 FXYD4P59646 89 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 TSPAN5P62079 268 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 RPL39P5Q59GN2 51 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 TRIQKQ629K1 86 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 DHRS11Q6UWP2 260 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 MEGF9Q9H1U4 602 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 PIPOXQ9P0Z9 390 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 ZNF221Q9UK13 617 aa17.11■□□□□ 0.33
VPS29-206ENST00000549578 IFNA6P05013 189 aa17.1■□□□□ 0.33
VPS29-206ENST00000549578 AKAIN1P0CW23 69 aa17.1■□□□□ 0.33
VPS29-206ENST00000549578 KLF9Q13886 244 aaPredicted RBP17.1■□□□□ 0.33
VPS29-206ENST00000549578 TOMM5Q8N4H5 51 aa17.1■□□□□ 0.33
VPS29-206ENST00000549578 OR4C16Q8NGL9 310 aa17.1■□□□□ 0.33
VPS29-206ENST00000549578 OR6F1Q8NGZ6 308 aa17.1■□□□□ 0.33
VPS29-206ENST00000549578 RTN4IP1Q8WWV3 396 aaPredicted RBP17.1■□□□□ 0.33
VPS29-206ENST00000549578 ZNF251Q9BRH9 671 aa17.1■□□□□ 0.33
VPS29-206ENST00000549578 PRDM13Q9H4Q3 707 aa17.1■□□□□ 0.33
VPS29-206ENST00000549578 A0A1W2PPI3 338 aa17.09■□□□□ 0.33
VPS29-206ENST00000549578 IL7P13232 177 aa17.09■□□□□ 0.33
VPS29-206ENST00000549578 HERV-K104P61576 105 aa17.09■□□□□ 0.33
VPS29-206ENST00000549578 ZNF846Q147U1 533 aa17.09■□□□□ 0.33
VPS29-206ENST00000549578 ZNF833PQ6ZTB9 187 aa17.09■□□□□ 0.33
VPS29-206ENST00000549578 TMEM17Q86X19 198 aa17.09■□□□□ 0.33
VPS29-206ENST00000549578 TGIF2LXQ8IUE1 241 aa17.09■□□□□ 0.33
VPS29-206ENST00000549578 OR56B4Q8NH76 319 aa17.09■□□□□ 0.33
VPS29-206ENST00000549578 SECTM1Q8WVN6 248 aa17.09■□□□□ 0.33
VPS29-206ENST00000549578 C5orf30Q96GV9 206 aa17.09■□□□□ 0.33
VPS29-206ENST00000549578 WDR12Q9GZL7 423 aaKnown RBP17.09■□□□□ 0.33
VPS29-206ENST00000549578 OOSP1A8MZH6 123 aa17.08■□□□□ 0.32
VPS29-206ENST00000549578 PROP1O75360 226 aa17.08■□□□□ 0.32
VPS29-206ENST00000549578 GAPDHP04406 335 aaKnown RBP17.08■□□□□ 0.32
VPS29-206ENST00000549578 AMY2AP04746 511 aa17.08■□□□□ 0.32
VPS29-206ENST00000549578 RAB13P51153 203 aa17.08■□□□□ 0.32
VPS29-206ENST00000549578 PPP5CP53041 499 aa17.08■□□□□ 0.32
VPS29-206ENST00000549578 ZNF816Q0VGE8 651 aaPredicted RBP17.08■□□□□ 0.32
VPS29-206ENST00000549578 MEF2DQ14814 521 aa17.08■□□□□ 0.32
VPS29-206ENST00000549578 ZNF57Q68EA5 555 aaPredicted RBP17.08■□□□□ 0.32
VPS29-206ENST00000549578 RBMS3Q6XE24 437 aaKnown RBP17.08■□□□□ 0.32
VPS29-206ENST00000549578 Q6YL49 198 aa17.08■□□□□ 0.32
VPS29-206ENST00000549578 ARRDC1Q8N5I2 433 aa17.08■□□□□ 0.32
VPS29-206ENST00000549578 MOB3AQ96BX8 217 aa17.08■□□□□ 0.32
VPS29-206ENST00000549578 SSX3Q99909 188 aa17.08■□□□□ 0.32
VPS29-206ENST00000549578 GHITMQ9H3K2 345 aa17.08■□□□□ 0.32
VPS29-206ENST00000549578 SETD2Q9BYW2 2564 aaPredicted RBP17.08■□□□□ 0.32
VPS29-206ENST00000549578 IGHV1-3A0A0C4DH29 117 aa17.07■□□□□ 0.32
VPS29-206ENST00000549578 TIMM23O14925 209 aa17.07■□□□□ 0.32
VPS29-206ENST00000549578 IGHV4-59P01825 116 aa17.07■□□□□ 0.32
VPS29-206ENST00000549578 ZNF735P0CB33 412 aa17.07■□□□□ 0.32
VPS29-206ENST00000549578 INPP1P49441 399 aa17.07■□□□□ 0.32
VPS29-206ENST00000549578 AP3S2P59780 193 aa17.07■□□□□ 0.32
VPS29-206ENST00000549578 LSAMPQ13449 338 aa17.07■□□□□ 0.32
VPS29-206ENST00000549578 CCDC144NLQ6NUI1 221 aa17.07■□□□□ 0.32
VPS29-206ENST00000549578 ZNF418Q8TF45 676 aaPredicted RBP17.07■□□□□ 0.32
VPS29-206ENST00000549578 FAM216AQ8WUB2 273 aa17.07■□□□□ 0.32
VPS29-206ENST00000549578 S1PR3Q99500 378 aa17.07■□□□□ 0.32
VPS29-206ENST00000549578 MRPL20Q9BYC9 149 aaKnown RBP17.07■□□□□ 0.32
VPS29-206ENST00000549578 FXYD6Q9H0Q3 95 aa17.07■□□□□ 0.32
VPS29-206ENST00000549578 SDHAF2Q9NX18 166 aa17.07■□□□□ 0.32
VPS29-206ENST00000549578 OR5H14A6NHG9 310 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms