RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 CAPZA3Q96KX2 299 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 TIPINQ9BVW5 301 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 C1QTNF6Q9BXI9 259 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 EIF5A2Q9GZV4 153 aaKnown RBP1.87□□□□□ -2.11
VPS29-205ENST00000548539 NSRP1Q9H0G5 558 aaKnown RBP1.87□□□□□ -2.11
VPS29-205ENST00000548539 HDHD2Q9H0R4 259 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 PLEKHJ1Q9NW61 149 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 HDGFL3Q9Y3E1 203 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 ALG5Q9Y673 324 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 CEP170Q5SW79 1584 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 COL18A1P39060 1754 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 C19orf71A6NCJ1 209 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 ZNF878C9JN71 531 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 COPEO14579 308 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 BIRC5O15392 142 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 ESDP10768 282 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 DAPP51397 102 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 SPIN4Q56A73 249 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 LCN8Q6JVE9 175 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 ZNF567Q8N184 647 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 OR11H1Q8NG94 326 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 OR10A6Q8NH74 314 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 OR7D2Q96RA2 312 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 MGLLQ99685 303 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 SLC22A4Q9H015 551 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 HEY1Q9Y5J3 304 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 MINOS1-NBL1R4GNA1 71 aa1.86□□□□□ -2.11
VPS29-205ENST00000548539 SDK2Q58EX2 2172 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 RIMS2Q9UQ26 1411 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 LY6HO94772 140 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 CRYBA1P05813 215 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 IGHV3-30-3P0DP02 117 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 SLC25A16P16260 332 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 MIPP30301 263 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 LPAR6P43657 344 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 BLVRAP53004 296 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 EMP2P54851 167 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 ZNF181Q2M3W8 571 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 TMEM31Q5JXX7 168 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 RASL11AQ6T310 242 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 ZNF322Q6U7Q0 402 aaPredicted RBP1.85□□□□□ -2.11
VPS29-205ENST00000548539 FAM19A5Q7Z5A7 132 aaPredicted RBP1.85□□□□□ -2.11
VPS29-205ENST00000548539 OR4K13Q8NH42 304 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 ASB13Q8WXK3 278 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 CMTM5Q96DZ9 223 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 SMIM19Q96E16 107 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 KCTD7Q96MP8 289 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 CDCA4Q9BXL8 241 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 GNB1LQ9BYB4 327 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 DERL2Q9GZP9 239 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 C16orf95Q9H693 158 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 TUBA4BQ9H853 241 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 SHANK3Q9BYB0 1731 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 PTPRJQ12913 1337 aa1.85□□□□□ -2.11
VPS29-205ENST00000548539 YLPM1P49750 1951 aaKnown RBP1.85□□□□□ -2.11
VPS29-205ENST00000548539 MYO5BQ9ULV0 1848 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 NPATQ14207 1427 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 TRPM3Q9HCF6 1732 aaPredicted RBP1.84□□□□□ -2.11
VPS29-205ENST00000548539 A0A0A6YYH2 397 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 A6NJ64 397 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 PSMG1O95456 288 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 IGLV3-27P01718 113 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 OR10J1P30954 320 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 TSPEAR-AS2P59090 65 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 FGF12P61328 243 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 ZNF117Q03924 483 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 ACSBG2Q5FVE4 666 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 FAM151BQ6UXP7 276 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 CCDC121Q6ZUS5 278 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 Q8WTZ3 238 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 PACRGQ96M98 296 aaPredicted RBP1.84□□□□□ -2.11
VPS29-205ENST00000548539 TBX5Q99593 518 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 UPK3BQ9BT76 320 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 SMDT1Q9H4I9 107 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 SPANXB1Q9NS25 103 aaPredicted RBP1.84□□□□□ -2.11
VPS29-205ENST00000548539 CRCT1Q9UGL9 99 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 SNX12Q9UMY4 172 aa1.84□□□□□ -2.11
VPS29-205ENST00000548539 COL5A1P20908 1838 aaPredicted RBP1.84□□□□□ -2.12
VPS29-205ENST00000548539 TRAV8-1A0A0A6YYK1 113 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 IGHV3-73A0A0B4J1V6 119 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 A0A0J9YX75 114 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 GSTZ1O43708 216 aaPredicted RBP1.83□□□□□ -2.12
VPS29-205ENST00000548539 TYMSP04818 313 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 COX5BP10606 129 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 CD36P16671 472 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 ZNF7P17097 686 aaPredicted RBP1.83□□□□□ -2.12
VPS29-205ENST00000548539 OPRM1P35372 400 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 CD200P41217 278 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 CA7P43166 264 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 RWDD2BP57060 319 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 PPP1R1AQ13522 171 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 GNA13Q14344 377 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 KRTAP6-3Q3LI67 103 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 NAA40Q86UY6 237 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 C1orf174Q8IYL3 243 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 ZCCHC13Q8WW36 166 aaKnown RBP1.83□□□□□ -2.12
VPS29-205ENST00000548539 DHRS9Q9BPW9 319 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 OR51B6Q9H340 312 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 ZNF337Q9Y3M9 751 aa1.83□□□□□ -2.12
VPS29-205ENST00000548539 M0R381 172 aa1.82□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms