RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 HBG1P69891 147 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 HBG2P69892 147 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 FOXF2Q12947 444 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 GUK1Q16774 197 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 ZNF585BQ52M93 769 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 UNQ6494/PRO21346Q6UXR6 183 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 Q6ZR03 302 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 CD300LFQ8TDQ1 290 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 IL1F10Q8WWZ1 152 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 NINJ1Q92982 152 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 RBMXL1Q96E39 390 aaKnown RBP8.29□□□□□ -1.08
SS18-205ENST00000542420 MEGF10Q96KG7 1140 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 SNX22Q96L94 193 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 TMPRSS5Q9H3S3 457 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 TUBA4BQ9H853 241 aa8.29□□□□□ -1.08
SS18-205ENST00000542420 IFITM10A6NMD0 228 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 C12orf77C9JDV5 145 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 SOX15O60248 233 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 IFNA5P01569 189 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 IGKV1-39P01597 117 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 IGKV1D-39P04432 117 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 GLI4P10075 376 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 GZMHP20718 246 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 NKX6-1P78426 367 aaPredicted RBP8.28□□□□□ -1.08
SS18-205ENST00000542420 PMS2P11Q13670 270 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 ATP6V1FQ16864 119 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 REC114Q7Z4M0 266 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 ODF3L1Q8IXM7 274 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 C15orf54Q8N8G6 183 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 OR5C1Q8NGR4 320 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 OR51H1Q8NH63 302 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 FAM57AQ8TBR7 257 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 HSD17B10Q99714 261 aaKnown RBP8.28□□□□□ -1.08
SS18-205ENST00000542420 KIAA1456Q9P272 454 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 JPT1Q9UK76 154 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 RBM7Q9Y580 266 aaKnown RBP8.28□□□□□ -1.08
SS18-205ENST00000542420 TIMM9Q9Y5J7 89 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 RAB29O14966 203 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 ZNHIT1O43257 154 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 SPINT2O43291 252 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 PSPNO60542 156 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 AGFG2O95081 481 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 HBZP02008 142 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 PRH1P02810 166 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 OR8U9P0C7N5 309 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 PAX1P15863 534 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 NOVA1P51513 510 aaKnown RBP8.28□□□□□ -1.08
SS18-205ENST00000542420 DYNLT3P51808 116 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 SERF2P84101 59 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 TLE4Q04727 773 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 ZNF561Q8N587 486 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 PRSS33Q8NF86 280 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 OR10G4Q8NGN3 311 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 OR2G3Q8NGZ4 309 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 OR8U1Q8NH10 309 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 RNASE11Q8TAA1 199 aaKnown RBP8.28□□□□□ -1.08
SS18-205ENST00000542420 COQ2Q96H96 371 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 C2orf88Q9BSF0 95 aa8.28□□□□□ -1.08
SS18-205ENST00000542420 MRPL37Q9BZE1 423 aaKnown RBP8.28□□□□□ -1.08
SS18-205ENST00000542420 OPN3Q9H1Y3 402 aaPredicted RBP8.28□□□□□ -1.08
SS18-205ENST00000542420 A6NLC8 198 aa8.27□□□□□ -1.09
SS18-205ENST00000542420 MGST3O14880 152 aa8.27□□□□□ -1.09
SS18-205ENST00000542420 IGKV1-5P01602 117 aa8.27□□□□□ -1.09
SS18-205ENST00000542420 CRYAAP02489 173 aa8.27□□□□□ -1.09
SS18-205ENST00000542420 CD80P33681 288 aa8.27□□□□□ -1.09
SS18-205ENST00000542420 SSX2Q16385 188 aa8.27□□□□□ -1.09
SS18-205ENST00000542420 AARDQ4LEZ3 155 aa8.27□□□□□ -1.09
SS18-205ENST00000542420 TMEM171Q8WVE6 324 aa8.27□□□□□ -1.09
SS18-205ENST00000542420 MUCL1Q96DR8 90 aa8.27□□□□□ -1.09
SS18-205ENST00000542420 CIB3Q96Q77 187 aaPredicted RBP8.27□□□□□ -1.09
SS18-205ENST00000542420 HSPB7Q9UBY9 170 aa8.27□□□□□ -1.09
SS18-205ENST00000542420 CACNG5Q9UF02 275 aa8.27□□□□□ -1.09
SS18-205ENST00000542420 KCNS2Q9ULS6 477 aa8.27□□□□□ -1.09
SS18-205ENST00000542420 FAM215AQ9Y5M1 114 aa8.27□□□□□ -1.09
SS18-205ENST00000542420 CACNA1HO95180 2353 aa8.27□□□□□ -1.09
SS18-205ENST00000542420 A0A0G2JRQ6 117 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 RBFOX2O43251 390 aaKnown RBP eCLIP8.26□□□□□ -1.09
SS18-205ENST00000542420 TNFSF12O43508 249 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 YPEL1O60688 119 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 ZNF737O75373 536 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 CLDN14O95500 239 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 TMEM50AO95807 157 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 NQO2P16083 231 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 KIR2DS2P43631 304 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 COL10A1Q03692 680 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 ZNF616Q08AN1 781 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 KRBOX4Q5JUW0 171 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 AKR1C8PQ5T2L2 129 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 ALKBH2Q6NS38 261 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 HSD17B11Q8NBQ5 300 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 FAM222BQ8WU58 562 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 TCTEX1D2Q8WW35 142 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 PINX1Q96BK5 328 aaKnown RBP8.26□□□□□ -1.09
SS18-205ENST00000542420 YPEL2Q96QA6 119 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 SLC35B3Q9H1N7 401 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 SMCO4Q9NRQ5 59 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 ELOVL5Q9NYP7 299 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 OR14J1Q9UGF5 321 aa8.26□□□□□ -1.09
SS18-205ENST00000542420 HEATR1Q9H583 2144 aaKnown RBP8.26□□□□□ -1.09
SS18-205ENST00000542420 TANC2Q9HCD6 1990 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms