RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 HTD2P86397 168 aa11.86□□□□□ -0.51
CLSTN3-213ENST00000541953 DEFA5Q01523 94 aa11.86□□□□□ -0.51
CLSTN3-213ENST00000541953 ZFP1Q6P2D0 407 aa11.86□□□□□ -0.51
CLSTN3-213ENST00000541953 C6orf201Q7Z4U5 140 aa11.86□□□□□ -0.51
CLSTN3-213ENST00000541953 ABHD14BQ96IU4 210 aa11.86□□□□□ -0.51
CLSTN3-213ENST00000541953 YPEL2Q96QA6 119 aa11.86□□□□□ -0.51
CLSTN3-213ENST00000541953 CLCC1Q96S66 551 aa11.86□□□□□ -0.51
CLSTN3-213ENST00000541953 PALMDQ9NP74 551 aa11.86□□□□□ -0.51
CLSTN3-213ENST00000541953 CKLFQ9UBR5 152 aa11.86□□□□□ -0.51
CLSTN3-213ENST00000541953 H0YJW9 148 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 PROP1O75360 226 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 CA11O75493 328 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 SSBP2P81877 361 aaPredicted RBP11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 LAIR2Q6ISS4 152 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 PQLC1Q8N2U9 271 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 SVOPQ8N4V2 548 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 OR2AK2Q8NG84 335 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 OR6Q1Q8NGQ2 317 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 ABHD5Q8WTS1 349 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 IL1F10Q8WWZ1 152 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 NICN1Q9BSH3 213 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 FAAP24Q9BTP7 215 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 ZMAT4Q9H898 229 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 S100A14Q9HCY8 104 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 RAB9BQ9NP90 201 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 C19orf73Q9NVV2 129 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 KCNIP1Q9NZI2 227 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 KIAA1456Q9P272 454 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 ADAM30Q9UKF2 790 aa11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 EXOSC1Q9Y3B2 195 aaKnown RBP11.85□□□□□ -0.51
CLSTN3-213ENST00000541953 FRAS1Q86XX4 4008 aa11.84□□□□□ -0.51
CLSTN3-213ENST00000541953 A0A0A6YYD4 124 aa11.84□□□□□ -0.51
CLSTN3-213ENST00000541953 OR8U9P0C7N5 309 aa11.84□□□□□ -0.51
CLSTN3-213ENST00000541953 MYL12AP19105 171 aa11.84□□□□□ -0.51
CLSTN3-213ENST00000541953 CAPGP40121 348 aa11.84□□□□□ -0.51
CLSTN3-213ENST00000541953 PITPNAQ00169 270 aa11.84□□□□□ -0.51
CLSTN3-213ENST00000541953 LY6G6FQ5SQ64 297 aa11.84□□□□□ -0.51
CLSTN3-213ENST00000541953 ZNF660Q6AZW8 331 aaPredicted RBP11.84□□□□□ -0.51
CLSTN3-213ENST00000541953 CD200R1LQ6Q8B3 271 aa11.84□□□□□ -0.51
CLSTN3-213ENST00000541953 ZNF554Q86TJ5 538 aa11.84□□□□□ -0.51
CLSTN3-213ENST00000541953 PPP1R27Q86WC6 154 aa11.84□□□□□ -0.51
CLSTN3-213ENST00000541953 DRAXINQ8NBI3 349 aaPredicted RBP11.84□□□□□ -0.51
CLSTN3-213ENST00000541953 LFNGQ8NES3 379 aa11.84□□□□□ -0.51
CLSTN3-213ENST00000541953 GGHQ92820 318 aa11.84□□□□□ -0.51
CLSTN3-213ENST00000541953 HDHD3Q9BSH5 251 aaPredicted RBP11.84□□□□□ -0.51
CLSTN3-213ENST00000541953 CST11Q9H112 138 aa11.84□□□□□ -0.51
CLSTN3-213ENST00000541953 OR1A1Q9P1Q5 309 aa11.84□□□□□ -0.51
CLSTN3-213ENST00000541953 DYNC1I1O14576 645 aa11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 ARPC1BO15143 372 aaKnown RBP11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 CA2P00918 260 aa11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 IGLV1-51P01701 117 aa11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 HSPB1P04792 205 aaKnown RBP11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 GLAP06280 429 aa11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 HTR2CP28335 458 aa11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 TPPP2P59282 170 aa11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 UNC119Q13432 240 aa11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 ACTBL2Q562R1 376 aa11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 ZNF880Q6PDB4 577 aa11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 UNQ5815/PRO19632Q6UWF5 114 aa11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 GALMQ96C23 342 aa11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 TMEM80Q96HE8 168 aa11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 RHOVQ96L33 236 aa11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 AGMATQ9BSE5 352 aa11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 SMPD3Q9NY59 655 aaPredicted RBP11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 CNOT2Q9NZN8 540 aaKnown RBP11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 TNCP24821 2201 aa11.83□□□□□ -0.52
CLSTN3-213ENST00000541953 NAPSAO96009 420 aa11.82□□□□□ -0.52
CLSTN3-213ENST00000541953 IGKV1-16P04430 117 aa11.82□□□□□ -0.52
CLSTN3-213ENST00000541953 CELP19835 753 aa11.82□□□□□ -0.52
CLSTN3-213ENST00000541953 PLGLAQ15195 96 aa11.82□□□□□ -0.52
CLSTN3-213ENST00000541953 PSG5Q15238 335 aa11.82□□□□□ -0.52
CLSTN3-213ENST00000541953 FAM71F2Q6NXP2 309 aa11.82□□□□□ -0.52
CLSTN3-213ENST00000541953 IL34Q6ZMJ4 242 aa11.82□□□□□ -0.52
CLSTN3-213ENST00000541953 CDH26Q8IXH8 852 aa11.82□□□□□ -0.52
CLSTN3-213ENST00000541953 OR4C12Q96R67 309 aa11.82□□□□□ -0.52
CLSTN3-213ENST00000541953 RSRP1Q9BUV0 290 aa11.82□□□□□ -0.52
CLSTN3-213ENST00000541953 METTL1Q9UBP6 276 aaKnown RBP11.82□□□□□ -0.52
CLSTN3-213ENST00000541953 SLC23A1Q9UHI7 598 aa11.82□□□□□ -0.52
CLSTN3-213ENST00000541953 OR5H14A6NHG9 310 aa11.81□□□□□ -0.52
CLSTN3-213ENST00000541953 LDLRAD4O15165 306 aa11.81□□□□□ -0.52
CLSTN3-213ENST00000541953 HSPA12AO43301 675 aa11.81□□□□□ -0.52
CLSTN3-213ENST00000541953 RGS11O94810 467 aa11.81□□□□□ -0.52
CLSTN3-213ENST00000541953 RPS27AP62979 156 aaKnown RBP11.81□□□□□ -0.52
CLSTN3-213ENST00000541953 ST3GAL4Q11206 333 aa11.81□□□□□ -0.52
CLSTN3-213ENST00000541953 LRRTM1Q86UE6 522 aa11.81□□□□□ -0.52
CLSTN3-213ENST00000541953 OR5AN1Q8NGI8 311 aa11.81□□□□□ -0.52
CLSTN3-213ENST00000541953 THAP7Q9BT49 309 aaPredicted RBP11.81□□□□□ -0.52
CLSTN3-213ENST00000541953 GHITMQ9H3K2 345 aa11.81□□□□□ -0.52
CLSTN3-213ENST00000541953 RETNQ9HD89 108 aa11.81□□□□□ -0.52
CLSTN3-213ENST00000541953 WASHC3Q9Y3C0 194 aa11.81□□□□□ -0.52
CLSTN3-213ENST00000541953 IZUMO1RA6ND01 250 aa11.8□□□□□ -0.52
CLSTN3-213ENST00000541953 H7C2Y5 167 aa11.8□□□□□ -0.52
CLSTN3-213ENST00000541953 RBMXL2O75526 392 aaKnown RBP11.8□□□□□ -0.52
CLSTN3-213ENST00000541953 TRBV12-3P01733 135 aa11.8□□□□□ -0.52
CLSTN3-213ENST00000541953 TRGV3P03979 118 aa11.8□□□□□ -0.52
CLSTN3-213ENST00000541953 GSTP1P09211 210 aaKnown RBP11.8□□□□□ -0.52
CLSTN3-213ENST00000541953 GNAO1P09471 354 aa11.8□□□□□ -0.52
CLSTN3-213ENST00000541953 QRFPP83859 136 aa11.8□□□□□ -0.52
CLSTN3-213ENST00000541953 PJVKQ0ZLH3 352 aa11.8□□□□□ -0.52
CLSTN3-213ENST00000541953 AKIRIN2Q53H80 203 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms