RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 TMEM187Q14656 261 aa14.56□□□□□ -0.08
CLIP1-215ENST00000541108 ANKRD55Q3KP44 614 aa14.56□□□□□ -0.08
CLIP1-215ENST00000541108 LIN54Q6MZP7 749 aa14.56□□□□□ -0.08
CLIP1-215ENST00000541108 C8orf31Q8N9H6 132 aa14.56□□□□□ -0.08
CLIP1-215ENST00000541108 OR2A7Q96R45 310 aa14.56□□□□□ -0.08
CLIP1-215ENST00000541108 ABHD14AQ9BUJ0 271 aa14.56□□□□□ -0.08
CLIP1-215ENST00000541108 RNF150Q9ULK6 438 aa14.56□□□□□ -0.08
CLIP1-215ENST00000541108 LOC105371242A0A075B767 164 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 RNF212BA8MTL3 300 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 ST8SIA5O15466 376 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 PHF1O43189 567 aaPredicted RBP14.55□□□□□ -0.08
CLIP1-215ENST00000541108 HNRNPCP07910 306 aaKnown RBP eCLIP14.55□□□□□ -0.08
CLIP1-215ENST00000541108 IGHV1-8P0DP01 117 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 LMO4P61968 165 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 CT45A1Q5HYN5 189 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 SLC25A48Q6ZT89 311 aaKnown RBP14.55□□□□□ -0.08
CLIP1-215ENST00000541108 CT45A3Q8NHU0 189 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 PERPQ96FX8 193 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 TMEM222Q9H0R3 208 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 RAB18Q9NP72 206 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 A8MXK9 166 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 H0Y980 276 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 SP6Q3SY56 376 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 ZNF66Q6ZN08 573 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 LIAT1Q6ZQX7 453 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 ZNF436-AS1Q8NC38 126 aaPredicted RBP14.55□□□□□ -0.08
CLIP1-215ENST00000541108 OR5M8Q8NGP6 311 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 CLDND2Q8NHS1 167 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 MSI2Q96DH6 328 aaKnown RBP14.55□□□□□ -0.08
CLIP1-215ENST00000541108 ABHD14BQ96IU4 210 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 FYTTD1Q96QD9 318 aaKnown RBP14.55□□□□□ -0.08
CLIP1-215ENST00000541108 TP53RKQ96S44 253 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 IFI27L2Q9H2X8 130 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 BEX4Q9NWD9 120 aaPredicted RBP14.55□□□□□ -0.08
CLIP1-215ENST00000541108 SDHAF2Q9NX18 166 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 PIPOXQ9P0Z9 390 aa14.55□□□□□ -0.08
CLIP1-215ENST00000541108 TACC2O95359 2948 aa14.54□□□□□ -0.08
CLIP1-215ENST00000541108 A8MV72 311 aaPredicted RBP14.54□□□□□ -0.08
CLIP1-215ENST00000541108 C22orf46C9J442 243 aa14.54□□□□□ -0.08
CLIP1-215ENST00000541108 GOSR2O14653 212 aa14.54□□□□□ -0.08
CLIP1-215ENST00000541108 RAB29O14966 203 aa14.54□□□□□ -0.08
CLIP1-215ENST00000541108 TNFSF12O43508 249 aa14.54□□□□□ -0.08
CLIP1-215ENST00000541108 GIPP09681 153 aaPredicted RBP14.54□□□□□ -0.08
CLIP1-215ENST00000541108 UCP1P25874 307 aa14.54□□□□□ -0.08
CLIP1-215ENST00000541108 GPR12P47775 334 aa14.54□□□□□ -0.08
CLIP1-215ENST00000541108 H2BFSP57053 126 aa14.54□□□□□ -0.08
CLIP1-215ENST00000541108 KRTAP10-9P60411 292 aa14.54□□□□□ -0.08
CLIP1-215ENST00000541108 EIF4EBP1Q13541 118 aaPredicted RBP14.54□□□□□ -0.08
CLIP1-215ENST00000541108 C2orf68Q2NKX9 166 aa14.54□□□□□ -0.08
CLIP1-215ENST00000541108 LGI3Q8N145 548 aa14.54□□□□□ -0.08
CLIP1-215ENST00000541108 TCTEX1D1Q8N7M0 179 aa14.54□□□□□ -0.08
CLIP1-215ENST00000541108 ZNF596Q8TC21 504 aa14.54□□□□□ -0.08
CLIP1-215ENST00000541108 TMEM56Q96MV1 263 aa14.54□□□□□ -0.08
CLIP1-215ENST00000541108 HSD17B10Q99714 261 aaKnown RBP14.54□□□□□ -0.08
CLIP1-215ENST00000541108 SESN1Q9Y6P5 492 aa14.54□□□□□ -0.08
CLIP1-215ENST00000541108 TMEM56-RWDD3S4R434 201 aa14.54□□□□□ -0.08
CLIP1-215ENST00000541108 CDS2O95674 445 aa14.53□□□□□ -0.08
CLIP1-215ENST00000541108 ERVFRD-1P60508 538 aa14.53□□□□□ -0.08
CLIP1-215ENST00000541108 SRSF4Q08170 494 aaKnown RBP14.53□□□□□ -0.08
CLIP1-215ENST00000541108 CATR1Q13166 79 aa14.53□□□□□ -0.08
CLIP1-215ENST00000541108 C1orf122Q6ZSJ8 110 aa14.53□□□□□ -0.08
CLIP1-215ENST00000541108 LRRC75A-AS1Q8N1F1 130 aa14.53□□□□□ -0.08
CLIP1-215ENST00000541108 LINC00311Q8N616 119 aa14.53□□□□□ -0.08
CLIP1-215ENST00000541108 FAM212BQ9NTI7 297 aaPredicted RBP14.53□□□□□ -0.08
CLIP1-215ENST00000541108 LIN7CQ9NUP9 197 aaKnown RBP14.53□□□□□ -0.08
CLIP1-215ENST00000541108 KIAA1324LA8MWY0 1029 aaPredicted RBP14.52□□□□□ -0.08
CLIP1-215ENST00000541108 M0R1W7 72 aa14.52□□□□□ -0.08
CLIP1-215ENST00000541108 IGHV3-7P01780 117 aa14.52□□□□□ -0.08
CLIP1-215ENST00000541108 RAP2BP61225 183 aa14.52□□□□□ -0.08
CLIP1-215ENST00000541108 UTF1Q5T230 341 aa14.52□□□□□ -0.08
CLIP1-215ENST00000541108 TNFRSF14Q92956 283 aa14.52□□□□□ -0.08
CLIP1-215ENST00000541108 LEAP2Q969E1 77 aa14.52□□□□□ -0.08
CLIP1-215ENST00000541108 IL22RA2Q969J5 263 aa14.52□□□□□ -0.08
CLIP1-215ENST00000541108 TMEM133Q9H2Q1 129 aa14.52□□□□□ -0.08
CLIP1-215ENST00000541108 POLR3KQ9Y2Y1 108 aaPredicted RBP14.52□□□□□ -0.08
CLIP1-215ENST00000541108 CELSR2Q9HCU4 2923 aa14.52□□□□□ -0.09
CLIP1-215ENST00000541108 SLC31A2O15432 143 aa14.52□□□□□ -0.09
CLIP1-215ENST00000541108 PROP1O75360 226 aa14.52□□□□□ -0.09
CLIP1-215ENST00000541108 FOXH1O75593 365 aa14.52□□□□□ -0.09
CLIP1-215ENST00000541108 DNASE1P24855 282 aa14.52□□□□□ -0.09
CLIP1-215ENST00000541108 KIR3DL3Q8N743 410 aa14.52□□□□□ -0.09
CLIP1-215ENST00000541108 OR51H1Q8NH63 302 aa14.52□□□□□ -0.09
CLIP1-215ENST00000541108 OR9G1Q8NH87 305 aa14.52□□□□□ -0.09
CLIP1-215ENST00000541108 C5orf30Q96GV9 206 aa14.52□□□□□ -0.09
CLIP1-215ENST00000541108 GPHA2Q96T91 129 aa14.52□□□□□ -0.09
CLIP1-215ENST00000541108 METTL8Q9H825 291 aaKnown RBP14.52□□□□□ -0.09
CLIP1-215ENST00000541108 PRR13Q9NZ81 148 aa14.52□□□□□ -0.09
CLIP1-215ENST00000541108 FBN2P35556 2912 aa14.51□□□□□ -0.09
CLIP1-215ENST00000541108 DUXBA0A1W2PPF3 345 aa14.51□□□□□ -0.09
CLIP1-215ENST00000541108 J3QR06 171 aa14.51□□□□□ -0.09
CLIP1-215ENST00000541108 ENSAO43768 121 aaKnown RBP14.51□□□□□ -0.09
CLIP1-215ENST00000541108 RPA2P15927 270 aa14.51□□□□□ -0.09
CLIP1-215ENST00000541108 ZFP36P26651 326 aaKnown RBP14.51□□□□□ -0.09
CLIP1-215ENST00000541108 GNG10P50151 68 aa14.51□□□□□ -0.09
CLIP1-215ENST00000541108 CYCSP99999 105 aaKnown RBP14.51□□□□□ -0.09
CLIP1-215ENST00000541108 GSG1LQ6UXU4 331 aa14.51□□□□□ -0.09
CLIP1-215ENST00000541108 ODF3L1Q8IXM7 274 aa14.51□□□□□ -0.09
CLIP1-215ENST00000541108 C18orf12Q96KH6 178 aa14.51□□□□□ -0.09
CLIP1-215ENST00000541108 TMED3Q9Y3Q3 217 aa14.51□□□□□ -0.09
CLIP1-215ENST00000541108 PTPN13Q12923 2485 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms