RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	MINDY2	Q8NBR6	621 aa		10.23	□□□□□ -0.77
SEMA4D-223	ENST00000540475	C4orf3	Q8WVX3	66 aa		10.23	□□□□□ -0.77
SEMA4D-223	ENST00000540475	PTX4	Q96A99	478 aa		10.23	□□□□□ -0.77
SEMA4D-223	ENST00000540475	UBE2E2	Q96LR5	201 aa		10.23	□□□□□ -0.77
SEMA4D-223	ENST00000540475	OR51J1	Q9H342	316 aa		10.23	□□□□□ -0.77
SEMA4D-223	ENST00000540475	KCNK15	Q9H427	330 aa		10.23	□□□□□ -0.77
SEMA4D-223	ENST00000540475	PLEKHJ1	Q9NW61	149 aa		10.23	□□□□□ -0.77
SEMA4D-223	ENST00000540475	STEAP1	Q9UHE8	339 aa		10.23	□□□□□ -0.77
SEMA4D-223	ENST00000540475	SLC23A1	Q9UHI7	598 aa		10.23	□□□□□ -0.77
SEMA4D-223	ENST00000540475	MGAT4A	Q9UM21	535 aa		10.23	□□□□□ -0.77
SEMA4D-223	ENST00000540475	NBR2	O15453	112 aa		10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	RAMP3	O60896	148 aa		10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	ARL6IP5	O75915	188 aa		10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	CT45A6	P0DMU7	189 aa		10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	CT45A5	P0DMU8	189 aa		10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	CT45A7	P0DMV0	189 aa		10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	ARSB	P15848	533 aa		10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	CNTFR	P26992	372 aa		10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	RPS25	P62851	125 aa	Known RBP	10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	LCNL1	Q6ZST4	164 aa		10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	ZNF491	Q8N8L2	437 aa		10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	OR5AN1	Q8NGI8	311 aa		10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	TMEM203	Q969S6	136 aa		10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	DUX3	Q96PT4	197 aa		10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	RNF5	Q99942	180 aa		10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	URM1	Q9BTM9	101 aa	Known RBP	10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	TOLLIP	Q9H0E2	274 aa		10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	AK3	Q9UIJ7	227 aa		10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	AK6	Q9Y3D8	172 aa	Known RBP	10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	DNAH7	Q8WXX0	4024 aa		10.22	□□□□□ -0.77
SEMA4D-223	ENST00000540475	OR5H14	A6NHG9	310 aa		10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475		I3L521	148 aa		10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475	PROP1	O75360	226 aa		10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475	SLC2A2	P11168	524 aa	Predicted RBP	10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475	MC5R	P33032	325 aa		10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475	RANBP1	P43487	201 aa		10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475	PSMD7	P51665	324 aa		10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475	FABP5	Q01469	135 aa		10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475	DCTN2	Q13561	401 aa	Known RBP	10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475	DEFB136	Q30KP8	78 aa		10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475	ZNF660	Q6AZW8	331 aa	Predicted RBP	10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475	LIN54	Q6MZP7	749 aa		10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475	OR5M8	Q8NGP6	311 aa		10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475	MGLL	Q99685	303 aa		10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475	B9D2	Q9BPU9	175 aa		10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475	KLK15	Q9H2R5	256 aa		10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475		Q9N2K0	584 aa		10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475	SCOC	Q9UIL1	159 aa		10.21	□□□□□ -0.77
SEMA4D-223	ENST00000540475		G3V318	75 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475		H0YJW9	148 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	ATP6V0E1	O15342	81 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	ST8SIA5	O15466	376 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	RBBP9	O75884	186 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	ZBTB25	P24278	435 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	HLA-DRB3	P79483	266 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	DGCR2	P98153	550 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	P2RY14	Q15391	338 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	C2orf76	Q3KRA6	126 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	PLAC9	Q5JTB6	97 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	C9orf66	Q5T8R8	295 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	CD200R1L	Q6Q8B3	271 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	IL1F10	Q8WWZ1	152 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	EDARADD	Q8WWZ3	215 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	ARHGAP5-AS1	Q96IT6	56 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	HDHD3	Q9BSH5	251 aa	Predicted RBP	10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	PARP12	Q9H0J9	701 aa	Known RBP	10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	C11orf54	Q9H0W9	315 aa	Predicted RBP	10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	PLGRKT	Q9HBL7	147 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	ACOT13	Q9NPJ3	140 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	GAB2	Q9UQC2	676 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	LSM4	Q9Y4Z0	139 aa	Known RBP	10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	NUBP2	Q9Y5Y2	271 aa		10.2	□□□□□ -0.78
SEMA4D-223	ENST00000540475	TRAV1-2	A0A0B4J238	106 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	TRAV41	A0A0B4J266	112 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	IGKV1-6	A0A0C4DH72	117 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	RRH	O14718	337 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	SCT	P09683	121 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	HSMCR30	P0CW71	290 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	EGR2	P11161	476 aa	Predicted RBP	10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	CALR	P27797	417 aa	Known RBP	10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	CEACAM6	P40199	344 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	RAB9A	P51151	201 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	LUM	P51884	338 aa	Predicted RBP	10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	TBCE	Q15813	527 aa	Predicted RBP	10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	RAB11B	Q15907	218 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	RPL39P5	Q59GN2	51 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	DEFB121	Q5J5C9	76 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	VAX1	Q5SQQ9	334 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	ASPHD1	Q5U4P2	390 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	FAM131A	Q6UXB0	335 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	TCTEX1D1	Q8N7M0	179 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	OR11H1	Q8NG94	326 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	FAM3D	Q96BQ1	224 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	ABHD14B	Q96IU4	210 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	PECR	Q9BY49	303 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	GNB4	Q9HAV0	340 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	CHMP1A	Q9HD42	196 aa	Predicted RBP	10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	C12orf4	Q9NQ89	552 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	KIAA1456	Q9P272	454 aa		10.19	□□□□□ -0.78
SEMA4D-223	ENST00000540475	VSIG4	Q9Y279	399 aa		10.19	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms