RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 COX5AP20674 150 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 FGF7P21781 194 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 FHITP49789 147 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 ID3Q02535 119 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 HERPUD1Q15011 391 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 ZNF66Q6ZN08 573 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 STARD4Q96DR4 205 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 TRGV8A0A0C4DH27 118 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 ODAMA1E959 279 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 S100PP25815 95 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 IL15RAQ13261 267 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 DTD1Q8TEA8 209 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 DMRTA2Q96SC8 542 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 SHANK1Q9Y566 2161 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 IGHV1-18A0A0C4DH31 117 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 SLC25A6P12236 298 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 PTAFRP25105 342 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 SNCAP37840 140 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 RPS10P46783 165 aaKnown RBP9.1□□□□□ -0.95
CLIP1-213ENST00000540338 RPS16P62249 146 aaKnown RBP9.1□□□□□ -0.95
CLIP1-213ENST00000540338 TESK1Q15569 626 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 WDR82Q6UXN9 313 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 C20orf204Q6ZNR8 217 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 LURAP1Q96LR2 239 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 OR5B12Q96R08 314 aa9.1□□□□□ -0.95
CLIP1-213ENST00000540338 ACTR3CQ9C0K3 210 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-213ENST00000540338 FAM90A26D6RGX4 464 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 OR2C1O95371 312 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 FAM157CP0CG43 387 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 LYG1Q8N1E2 194 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 CPAMD8Q8IZJ3 1885 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 CACNA1GO43497 2377 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 IGKV3-15P01624 115 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 KITLGP21583 273 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 SSTR5P35346 364 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 ADAM5Q6NVV9 412 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 BTNL8Q6UX41 500 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 LDLRAD3Q86YD5 345 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 WDR31Q8NA23 367 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 BSCL2Q96G97 398 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-213ENST00000540338 TMEM147Q9BVK8 224 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 FGF23Q9GZV9 251 aaPredicted RBP9.09□□□□□ -0.95
CLIP1-213ENST00000540338 CARHSP1Q9Y2V2 147 aaKnown RBP9.09□□□□□ -0.95
CLIP1-213ENST00000540338 ICE1Q9Y2F5 2266 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 IGKV1-6A0A0C4DH72 117 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 MT-CO2P00403 227 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 NPBWR1P48145 328 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 SMDT1Q9H4I9 107 aa9.09□□□□□ -0.95
CLIP1-213ENST00000540338 ACTL6BO94805 426 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 KIR2DS2P43631 304 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 RTL8BQ17RB0 113 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 SPINK9Q5DT21 86 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 IFT22Q9H7X7 185 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 WFDC1Q9HC57 220 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 KCNIP2Q9NS61 270 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 KIAA1456Q9P272 454 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 EXPH5Q8NEV8 1989 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 ACACAQ13085 2346 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 hADV38S2A0JD32 116 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 APOA2P02652 100 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 ACOT6Q3I5F7 207 aaPredicted RBP9.08□□□□□ -0.96
CLIP1-213ENST00000540338 AWAT1Q58HT5 328 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 DPPA3Q6W0C5 159 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 ZNF429Q86V71 674 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 ZNF665Q9H7R5 613 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 SRSF3P84103 164 aaKnown RBP9.08□□□□□ -0.96
CLIP1-213ENST00000540338 NMSQ5H8A3 153 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 PCSK4Q6UW60 755 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 ZFP82Q8N141 532 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 OR5T1Q8NG75 326 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 C7orf77A4D0Y5 90 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 MAP1LC3B2A6NCE7 125 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 PSPNO60542 156 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 MRPS11P82912 194 aaKnown RBP9.08□□□□□ -0.96
CLIP1-213ENST00000540338 FAM27E3Q08E93 113 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 CST9LP1Q5W188 147 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 MYPOPQ86VE0 399 aaPredicted RBP9.08□□□□□ -0.96
CLIP1-213ENST00000540338 OR4S2Q8NH73 311 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 FAM57AQ8TBR7 257 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 TVP23CQ96ET8 276 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 MEGF10Q96KG7 1140 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 MAP1LC3BQ9GZQ8 125 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 CLN8Q9UBY8 286 aa9.08□□□□□ -0.96
CLIP1-213ENST00000540338 MBD3L4A6NDZ8 208 aaPredicted RBP9.07□□□□□ -0.96
CLIP1-213ENST00000540338 MBD3L3A6NE82 208 aaPredicted RBP9.07□□□□□ -0.96
CLIP1-213ENST00000540338 MBD3L5A6NJ08 208 aaPredicted RBP9.07□□□□□ -0.96
CLIP1-213ENST00000540338 CLDN14O95500 239 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 PTBP3O95758 552 aaKnown RBP9.07□□□□□ -0.96
CLIP1-213ENST00000540338 HRASP01112 189 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 GNG10P50151 68 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 SERF2P84101 59 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 TNFRSF9Q07011 255 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 OR13A1Q8NGR1 328 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 MBD3L2Q8NHZ7 208 aaPredicted RBP9.07□□□□□ -0.96
CLIP1-213ENST00000540338 RBKSQ9H477 322 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 BARX1Q9HBU1 254 aaPredicted RBP9.07□□□□□ -0.96
CLIP1-213ENST00000540338 WT1P19544 449 aaPredicted RBP9.07□□□□□ -0.96
CLIP1-213ENST00000540338 MBNL2Q5VZF2 373 aaKnown RBP9.07□□□□□ -0.96
CLIP1-213ENST00000540338 C2CD4CQ8TF44 421 aa9.07□□□□□ -0.96
CLIP1-213ENST00000540338 RND1Q92730 232 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms