RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 A0A1W2PRV1 198 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 M0R1B8 84 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 TK1P04183 234 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 SCTP09683 121 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 PSMB6P28072 239 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 MDH2P40926 338 aaKnown RBP8.16□□□□□ -1.1
CLIP1-212ENST00000540304 TMPRSS3P57727 454 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 ZNF345Q14585 488 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 ZNF146Q15072 292 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 SPIN3Q5JUX0 258 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 GFRALQ6UXV0 394 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 NAA60Q9H7X0 242 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 SLC2A9Q9NRM0 540 aa8.16□□□□□ -1.1
CLIP1-212ENST00000540304 A0A0D9SG52 128 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 A0A1B0GW55 424 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 OR2H2O95918 312 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 DUX4L2P0CJ85 424 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 DUX4L3P0CJ86 424 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 DUX4L4P0CJ87 422 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 DUX4L5P0CJ88 424 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 DUX4L6P0CJ89 424 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 DUX4L7P0CJ90 424 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 BMP5P22003 454 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 C10orf91Q5T1B1 145 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 OR8G2PQ6IF36 304 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 ZNF880Q6PDB4 577 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 Q6ZR03 302 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 CCDC71LQ8N9Z2 235 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 RTN4IP1Q8WWV3 396 aaPredicted RBP8.15□□□□□ -1.1
CLIP1-212ENST00000540304 GALNT14Q96FL9 552 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 SYT3Q9BQG1 590 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 LPAR2Q9HBW0 351 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 HES4Q9HCC6 221 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 CBLN4Q9NTU7 201 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 RASL12Q9NYN1 266 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 DUX4Q9UBX2 424 aa8.15□□□□□ -1.1
CLIP1-212ENST00000540304 PTPRQQ9UMZ3 2332 aa8.15□□□□□ -1.11
CLIP1-212ENST00000540304 SIRPB1O00241 398 aa8.15□□□□□ -1.11
CLIP1-212ENST00000540304 SLC33A1O00400 549 aaPredicted RBP8.15□□□□□ -1.11
CLIP1-212ENST00000540304 SH2D1BO14796 132 aa8.15□□□□□ -1.11
CLIP1-212ENST00000540304 ATXN7O15265 892 aaPredicted RBP8.15□□□□□ -1.11
CLIP1-212ENST00000540304 OR2F2O95006 317 aa8.15□□□□□ -1.11
CLIP1-212ENST00000540304 IFNA17P01571 189 aa8.15□□□□□ -1.11
CLIP1-212ENST00000540304 CRYAAP02489 173 aa8.15□□□□□ -1.11
CLIP1-212ENST00000540304 OR3A1P47881 315 aa8.15□□□□□ -1.11
CLIP1-212ENST00000540304 MZT1Q08AG7 82 aa8.15□□□□□ -1.11
CLIP1-212ENST00000540304 OR2F1Q13607 317 aa8.15□□□□□ -1.11
CLIP1-212ENST00000540304 HERPUD1Q15011 391 aa8.15□□□□□ -1.11
CLIP1-212ENST00000540304 PHLDA2Q53GA4 152 aa8.15□□□□□ -1.11
CLIP1-212ENST00000540304 C20orf204Q6ZNR8 217 aa8.15□□□□□ -1.11
CLIP1-212ENST00000540304 MRGPRGQ86SM5 289 aa8.15□□□□□ -1.11
CLIP1-212ENST00000540304 OR1L6Q8NGR2 347 aa8.15□□□□□ -1.11
CLIP1-212ENST00000540304 C2orf50Q96LR7 162 aa8.15□□□□□ -1.11
CLIP1-212ENST00000540304 MSL2Q9HCI7 577 aa8.15□□□□□ -1.11
CLIP1-212ENST00000540304 ROS1P08922 2347 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 SPTA1P02549 2419 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 A0A0G2JNJ9 132 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 K7EP13 123 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 APOBEC3AP31941 199 aaPredicted RBP8.14□□□□□ -1.11
CLIP1-212ENST00000540304 AKR1C3P42330 323 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 UCNP55089 124 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 TMEM33P57088 247 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 HLA-DRB3P79483 266 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 PDZD11Q5EBL8 140 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 ACOT7LQ6ZUV0 252 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 MOB1BQ7L9L4 216 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 C11orf53Q8IXP5 236 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 KCNRGQ8N5I3 272 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 OR4A4PQ8NGN8 299 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 OR10C1Q96KK4 312 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 SMCO4Q9NRQ5 59 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 Q9UFV3 132 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 ZNF835Q9Y2P0 537 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 MEMO1Q9Y316 297 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 NBASA2RRP1 2371 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 RNF222A6NCQ9 220 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 NKX6-3A6NJ46 265 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 ZNF705EA8MWA4 302 aaPredicted RBP8.14□□□□□ -1.11
CLIP1-212ENST00000540304 TUSC2O75896 110 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 MT-ND4LP03901 98 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 OR5AC1P0C628 307 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 FAM87AP0C7U9 286 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 SRSF3P84103 164 aaKnown RBP8.14□□□□□ -1.11
CLIP1-212ENST00000540304 FAM27E3Q08E93 113 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 PRAMEF6Q5VXH4 476 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 ADAM5Q6NVV9 412 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 UQCC3Q6UW78 93 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 SSX7Q7RTT5 188 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 BAP18Q8IXM2 172 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 INO80EQ8NBZ0 244 aaPredicted RBP8.14□□□□□ -1.11
CLIP1-212ENST00000540304 STXBP6Q8NFX7 210 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 CORO2AQ92828 525 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 SNRNP40Q96DI7 357 aaKnown RBP8.14□□□□□ -1.11
CLIP1-212ENST00000540304 ASF1BQ9NVP2 202 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 PLCE1Q9P212 2302 aa8.14□□□□□ -1.11
CLIP1-212ENST00000540304 CHD8Q9HCK8 2581 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 ATRXP46100 2492 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 TRBV6-7A0A0A0MS04 114 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 IGKV1-6A0A0C4DH72 117 aa8.13□□□□□ -1.11
CLIP1-212ENST00000540304 M0QZ24 198 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms