RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 TBR1Q16650 682 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 PCSK4Q6UW60 755 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 FAM213BQ8TBF2 198 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 S100PBPQ96BU1 408 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 RIMS4Q9H426 269 aaPredicted RBP9.05□□□□□ -0.96
CLIP1-210ENST00000538120 POLDIP2Q9Y2S7 368 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 DCHS1Q96JQ0 3298 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 SERTM2A0A1B0GWG4 89 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 ZNF727A8MUV8 499 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 SLC33A1O00400 549 aaPredicted RBP9.05□□□□□ -0.96
CLIP1-210ENST00000538120 OR2H2O95918 312 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 TUBG1P23258 451 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 LMO1P25800 156 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 FABP6P51161 128 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 RAB4BP61018 213 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 RPS23P62266 143 aaKnown RBP9.05□□□□□ -0.96
CLIP1-210ENST00000538120 HOXA4Q00056 320 aaPredicted RBP9.05□□□□□ -0.96
CLIP1-210ENST00000538120 ZNF146Q15072 292 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 ABCA11PQ4W5N1 156 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 MBNL2Q5VZF2 373 aaKnown RBP9.05□□□□□ -0.96
CLIP1-210ENST00000538120 CDPF1Q6NVV7 123 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 Q8IYB0 196 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 PLPPR1Q8TBJ4 325 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 SLC35B3Q9H1N7 401 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 HES4Q9HCC6 221 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 KCNJ16Q9NPI9 418 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 TUBG2Q9NRH3 451 aa9.05□□□□□ -0.96
CLIP1-210ENST00000538120 DSPP15924 2871 aaKnown RBP9.04□□□□□ -0.96
CLIP1-210ENST00000538120 PRR14LQ5THK1 2151 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 IGKV1D-13A0A0B4J2D9 117 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 C1QTNF9BB2RNN3 333 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 AP4M1O00189 453 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 SIRPB1O00241 398 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 GPR137BO60478 399 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 IGKV1-13P0DP09 117 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 HERV-K104P61576 105 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 GTF3C1Q12789 2109 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 FAM180AQ6UWF9 173 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 ZNF826PQ6ZT77 177 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 LRTM2Q8N967 370 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 MSI2Q96DH6 328 aaKnown RBP9.04□□□□□ -0.96
CLIP1-210ENST00000538120 KCNIP3Q9Y2W7 256 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 MMP24Q9Y5R2 645 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 INTS1Q8N201 2190 aaKnown RBP9.04□□□□□ -0.96
CLIP1-210ENST00000538120 SHANK1Q9Y566 2161 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 ESPL1Q14674 2120 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 PTPRZ1P23471 2315 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-210ENST00000538120 BORCS7-ASMTA0A0B4J1R7 106 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 KIR2DS1A0A191URI9 304 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 IFITM10A6NMD0 228 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 ADAM20O43506 726 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 TIMM8AO60220 97 aaPredicted RBP9.04□□□□□ -0.96
CLIP1-210ENST00000538120 KIR2DS4P43632 304 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 ZNF83P51522 516 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 CEBPGP53567 150 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 CLINT1Q14677 625 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 KIR2DS1Q14954 304 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 ZNF718Q3SXZ3 478 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 TIMM23BQ5SRD1 257 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 GAPTQ8N292 157 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 C18orf12Q96KH6 178 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 SFXN3Q9BWM7 321 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 CXXC4Q9H2H0 198 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 MSL2Q9HCI7 577 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 TMEM160Q9NX00 188 aa9.04□□□□□ -0.96
CLIP1-210ENST00000538120 K7ENP7 123 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 WNT9BO14905 357 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 NXPH2O95156 264 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 TK1P04183 234 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 S100PP25815 95 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 NHLH1Q02575 133 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 HAGHQ16775 308 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 PRAMEF6Q5VXH4 476 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 ZNF343Q6P1L6 599 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 ZNF497Q6ZNH5 498 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 C22orf34Q6ZV56 151 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 DOLPP1Q86YN1 238 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 CISD2Q8N5K1 135 aaKnown RBP9.03□□□□□ -0.96
CLIP1-210ENST00000538120 COMMD1Q8N668 190 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 TCTEX1D2Q8WW35 142 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 YPEL4Q96NS1 127 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 TP53RKQ96S44 253 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 GGACTQ9BVM4 153 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 SUCNR1Q9BXA5 334 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 MRPL37Q9BZE1 423 aaKnown RBP9.03□□□□□ -0.96
CLIP1-210ENST00000538120 TREM2Q9NZC2 230 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 TRAV39A0A0B4J263 110 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 FAM24AA6NFZ4 105 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 MPPED1O15442 326 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 OR2C1O95371 312 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 FBP1P09467 338 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 CTXN2P0C2S0 81 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 RAB4AP20338 218 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 OMGP23515 440 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 RPS10P46783 165 aaKnown RBP9.03□□□□□ -0.96
CLIP1-210ENST00000538120 CEBPDP49716 269 aaPredicted RBP9.03□□□□□ -0.96
CLIP1-210ENST00000538120 HLA-DRB3P79483 266 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 RHEBQ15382 184 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 LRP11Q86VZ4 500 aa9.03□□□□□ -0.96
CLIP1-210ENST00000538120 GPHA2Q96T91 129 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms