RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 RAB9AP51151 201 aa10.12□□□□□ -0.79
CPSF1-204ENST00000529288 GNB1P62873 340 aa10.12□□□□□ -0.79
CPSF1-204ENST00000529288 ZNF616Q08AN1 781 aa10.12□□□□□ -0.79
CPSF1-204ENST00000529288 IRF3Q14653 427 aa10.12□□□□□ -0.79
CPSF1-204ENST00000529288 P2RY14Q15391 338 aa10.12□□□□□ -0.79
CPSF1-204ENST00000529288 MED22Q15528 200 aa10.12□□□□□ -0.79
CPSF1-204ENST00000529288 HMGN3Q15651 99 aa10.12□□□□□ -0.79
CPSF1-204ENST00000529288 KCNG3Q8TAE7 436 aa10.12□□□□□ -0.79
CPSF1-204ENST00000529288 TMEM203Q969S6 136 aa10.12□□□□□ -0.79
CPSF1-204ENST00000529288 ABHD14BQ96IU4 210 aa10.12□□□□□ -0.79
CPSF1-204ENST00000529288 UBE2E2Q96LR5 201 aa10.12□□□□□ -0.79
CPSF1-204ENST00000529288 CHCHD6Q9BRQ6 235 aa10.12□□□□□ -0.79
CPSF1-204ENST00000529288 ALX4Q9H161 411 aaPredicted RBP10.12□□□□□ -0.79
CPSF1-204ENST00000529288 DUSP21Q9H596 190 aa10.12□□□□□ -0.79
CPSF1-204ENST00000529288 ZNF256Q9Y2P7 627 aaPredicted RBP10.12□□□□□ -0.79
CPSF1-204ENST00000529288 U3KQK5 164 aa10.12□□□□□ -0.79
CPSF1-204ENST00000529288 RAB29O14966 203 aa10.11□□□□□ -0.79
CPSF1-204ENST00000529288 SRMP19623 302 aa10.11□□□□□ -0.79
CPSF1-204ENST00000529288 C1orf100Q5SVJ3 147 aa10.11□□□□□ -0.79
CPSF1-204ENST00000529288 SVOPQ8N4V2 548 aa10.11□□□□□ -0.79
CPSF1-204ENST00000529288 DCUN1D4Q92564 292 aa10.11□□□□□ -0.79
CPSF1-204ENST00000529288 HDHD3Q9BSH5 251 aaPredicted RBP10.11□□□□□ -0.79
CPSF1-204ENST00000529288 PARP12Q9H0J9 701 aaKnown RBP10.11□□□□□ -0.79
CPSF1-204ENST00000529288 IFI27L2Q9H2X8 130 aa10.11□□□□□ -0.79
CPSF1-204ENST00000529288 PLGRKTQ9HBL7 147 aa10.11□□□□□ -0.79
CPSF1-204ENST00000529288 SCN3BQ9NY72 215 aa10.11□□□□□ -0.79
CPSF1-204ENST00000529288 PIPOXQ9P0Z9 390 aa10.11□□□□□ -0.79
CPSF1-204ENST00000529288 SLC23A1Q9UHI7 598 aa10.11□□□□□ -0.79
CPSF1-204ENST00000529288 RNF150Q9ULK6 438 aa10.11□□□□□ -0.79
CPSF1-204ENST00000529288 LSM4Q9Y4Z0 139 aaKnown RBP10.11□□□□□ -0.79
CPSF1-204ENST00000529288 I3L521 148 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 OVOL1O14753 267 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 SOCS1O15524 211 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 HSPA12AO43301 675 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 SAP30O75446 220 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 IGLV1-40P01703 118 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 HSMCR30P0CW71 290 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 CT45A6P0DMU7 189 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 CT45A5P0DMU8 189 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 CT45A7P0DMV0 189 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 CEACAM6P40199 344 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 UNC119Q13432 240 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 FHL3Q13643 280 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 KIAA0141Q14154 515 aaPredicted RBP10.1□□□□□ -0.79
CPSF1-204ENST00000529288 SPHARQ15513 63 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 LIPKQ5VXJ0 399 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 NPBQ8NG41 125 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 PHYHIPQ92561 330 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 UFD1Q92890 307 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 MS4A10Q96PG2 267 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 VCX3BQ9H321 246 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 OR1A1Q9P1Q5 309 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 AK3Q9UIJ7 227 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 ZNF580Q9UK33 172 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 FBXO7Q9Y3I1 522 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 COL7A1Q02388 2944 aa10.1□□□□□ -0.79
CPSF1-204ENST00000529288 NBEAL2Q6ZNJ1 2754 aa10.09□□□□□ -0.79
CPSF1-204ENST00000529288 A0A0A6YYD4 124 aa10.09□□□□□ -0.79
CPSF1-204ENST00000529288 FCN1O00602 326 aa10.09□□□□□ -0.79
CPSF1-204ENST00000529288 RRHO14718 337 aa10.09□□□□□ -0.79
CPSF1-204ENST00000529288 SLC22A1O15245 554 aa10.09□□□□□ -0.79
CPSF1-204ENST00000529288 IGHV3-11P01762 117 aa10.09□□□□□ -0.79
CPSF1-204ENST00000529288 CRHBPP24387 322 aa10.09□□□□□ -0.79
CPSF1-204ENST00000529288 HSPA13P48723 471 aa10.09□□□□□ -0.79
CPSF1-204ENST00000529288 SLURP1P55000 103 aa10.09□□□□□ -0.79
CPSF1-204ENST00000529288 CX3CL1P78423 397 aa10.09□□□□□ -0.79
CPSF1-204ENST00000529288 NDPQ00604 133 aa10.09□□□□□ -0.79
CPSF1-204ENST00000529288 LY6G6FQ5SQ64 297 aa10.09□□□□□ -0.79
CPSF1-204ENST00000529288 ASPHD1Q5U4P2 390 aa10.09□□□□□ -0.79
CPSF1-204ENST00000529288 ZNF660Q6AZW8 331 aaPredicted RBP10.09□□□□□ -0.79
CPSF1-204ENST00000529288 DRAXINQ8NBI3 349 aaPredicted RBP10.09□□□□□ -0.79
CPSF1-204ENST00000529288 OR6M1Q8NGM8 313 aa10.09□□□□□ -0.79
CPSF1-204ENST00000529288 MYOZ3Q8TDC0 251 aa10.09□□□□□ -0.79
CPSF1-204ENST00000529288 FAM103A1Q9BTL3 118 aaKnown RBP10.09□□□□□ -0.79
CPSF1-204ENST00000529288 URM1Q9BTM9 101 aaKnown RBP10.09□□□□□ -0.79
CPSF1-204ENST00000529288 TM2D1Q9BX74 207 aa10.09□□□□□ -0.79
CPSF1-204ENST00000529288 ISYNA1Q9NPH2 558 aa10.09□□□□□ -0.79
CPSF1-204ENST00000529288 FOXA2Q9Y261 457 aaPredicted RBP10.09□□□□□ -0.79
CPSF1-204ENST00000529288 AK6Q9Y3D8 172 aaKnown RBP10.09□□□□□ -0.79
CPSF1-204ENST00000529288 TMEM14DPA8MWL7 114 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 LINC01619G3V211 115 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 NDUFA3O95167 84 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 BPNT1O95861 308 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 NAPSAO96009 420 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 SCTP09683 121 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 ARSBP15848 533 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 ZBTB25P24278 435 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 MC5RP33032 325 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 VEGFCP49767 419 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 RPS16P62249 146 aaKnown RBP10.08□□□□□ -0.8
CPSF1-204ENST00000529288 HLA-DRB3P79483 266 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 RUNX1Q01196 453 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 TMEM267Q0VDI3 215 aaPredicted RBP10.08□□□□□ -0.8
CPSF1-204ENST00000529288 RAB11BQ15907 218 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 FAM71F2Q6NXP2 309 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 UNQ5815/PRO19632Q6UWF5 114 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 MOB1BQ7L9L4 216 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 PPP1R27Q86WC6 154 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 MINDY2Q8NBR6 621 aa10.08□□□□□ -0.8
CPSF1-204ENST00000529288 DLX4Q92988 240 aaPredicted RBP10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms