RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 CDRT1O95170 752 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 IGKV1-39P01597 117 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 IGKV1D-39P04432 117 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 NBEAP1P0C6P0 100 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 TLX1NBP0CAT3 122 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 CYBAP13498 195 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 GABRA3P34903 492 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 CCR6P51684 374 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 IAH1Q2TAA2 248 aaPredicted RBP3.78□□□□□ -1.8
USP47-204ENST00000525078 LAIR2Q6ISS4 152 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 GRINAQ7Z429 371 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 ANKRD29Q8N6D5 301 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 LY6G5BQ8NDX9 201 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 OR52L1Q8NGH7 329 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 OR5W2Q8NH69 310 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 MAFIPQ8WZ33 124 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 VOPP1Q96AW1 172 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 RNASE7Q9H1E1 156 aaKnown RBP3.78□□□□□ -1.8
USP47-204ENST00000525078 ABCG5Q9H222 651 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 UQCC1Q9NVA1 299 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 SS18L2Q9UHA2 77 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 ENOPH1Q9UHY7 261 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 SLC35A3Q9Y2D2 325 aa3.78□□□□□ -1.8
USP47-204ENST00000525078 GPATCH8Q9UKJ3 1502 aaKnown RBP3.78□□□□□ -1.8
USP47-204ENST00000525078 TMED7-TICAM2A0A0A6YYA0 188 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 H3BSA7 217 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 POP7O75817 140 aaKnown RBP3.77□□□□□ -1.81
USP47-204ENST00000525078 CRYZL1O95825 349 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 IGLV3-25P01717 112 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 HLA-DQB2P05538 268 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 PFN1P07737 140 aaKnown RBP3.77□□□□□ -1.81
USP47-204ENST00000525078 CCL1P22362 96 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 GABRA4P48169 554 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 LHX2P50458 406 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 CMC4P56277 68 aaPredicted RBP3.77□□□□□ -1.81
USP47-204ENST00000525078 DEFA1P59665 94 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 HSPE1P61604 102 aaKnown RBP3.77□□□□□ -1.81
USP47-204ENST00000525078 KCNJ8Q15842 424 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 C14orf177Q52M58 125 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 LUZP6Q538Z0 58 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 SMARCD3Q6STE5 483 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 ZNF439Q8NDP4 499 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 OR10J5Q8NHC4 309 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 GRPEL2Q8TAA5 225 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 GNPDA2Q8TDQ7 276 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 FAM210BQ96KR6 192 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 GPER1Q99527 375 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 TBL1YQ9BQ87 522 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 PLSCR3Q9NRY6 295 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 ANAPC10Q9UM13 185 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 CCDC88BA6NC98 1476 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 TSPOAP1O95153 1857 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 CLIP1P30622 1438 aa3.77□□□□□ -1.81
USP47-204ENST00000525078 ABCC8Q09428 1581 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 IGHV3-64DA0A0J9YX35 117 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 OR4C45A6NMZ5 311 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 M0R381 172 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 HMGB3O15347 200 aaKnown RBP3.76□□□□□ -1.81
USP47-204ENST00000525078 IGKV3-20P01619 116 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 HLA-DQA1P01909 254 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 ZNF133P52736 654 aaPredicted RBP3.76□□□□□ -1.81
USP47-204ENST00000525078 SNRPD2P62316 118 aaKnown RBP3.76□□□□□ -1.81
USP47-204ENST00000525078 ESRRGP62508 458 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 DEFA6Q01524 100 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 IL15RAQ13261 267 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 MORN3Q6PF18 240 aaPredicted RBP3.76□□□□□ -1.81
USP47-204ENST00000525078 TBPL2Q6SJ96 375 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 LINC01551Q86U37 167 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 ZNF329Q86UD4 541 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 BAP18Q8IXM2 172 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 OR8A1Q8NGG7 326 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 OR13D1Q8NGV5 346 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 KLK6Q92876 244 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 IMMP1LQ96LU5 166 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 CNBD2Q96M20 576 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 ZNF2Q9BSG1 426 aaPredicted RBP3.76□□□□□ -1.81
USP47-204ENST00000525078 CHCHD7Q9BUK0 85 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 CXorf21Q9HAI6 301 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 DHCR7Q9UBM7 475 aaKnown RBP3.76□□□□□ -1.81
USP47-204ENST00000525078 ZNF222Q9UK12 451 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 BIVM-ERCC5R4GMW8 1640 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 NUP155O75694 1391 aa3.76□□□□□ -1.81
USP47-204ENST00000525078 KMT2EQ8IZD2 1858 aa3.75□□□□□ -1.81
USP47-204ENST00000525078 NOTCH4Q99466 2003 aa3.75□□□□□ -1.81
USP47-204ENST00000525078 IGKV3D-15A0A087WSY6 115 aa3.75□□□□□ -1.81
USP47-204ENST00000525078 TRAV26-2A0A0B4J265 109 aa3.75□□□□□ -1.81
USP47-204ENST00000525078 G3V2T6 193 aa3.75□□□□□ -1.81
USP47-204ENST00000525078 MT-CO2P00403 227 aa3.75□□□□□ -1.81
USP47-204ENST00000525078 IGHMP01871 453 aa3.75□□□□□ -1.81
USP47-204ENST00000525078 HLA-DRB1P01911 266 aa3.75□□□□□ -1.81
USP47-204ENST00000525078 HLA-DQB1P01920 261 aa3.75□□□□□ -1.81
USP47-204ENST00000525078 LOXL1Q08397 574 aaPredicted RBP3.75□□□□□ -1.81
USP47-204ENST00000525078 AKR1C8PQ5T2L2 129 aa3.75□□□□□ -1.81
USP47-204ENST00000525078 NANOGP8Q6NSW7 305 aa3.75□□□□□ -1.81
USP47-204ENST00000525078 GOLT1AQ6ZVE7 132 aa3.75□□□□□ -1.81
USP47-204ENST00000525078 OR8B12Q8NGG6 310 aa3.75□□□□□ -1.81
USP47-204ENST00000525078 CT55Q8WUE5 264 aa3.75□□□□□ -1.81
USP47-204ENST00000525078 MS4A6EQ96DS6 147 aa3.75□□□□□ -1.81
USP47-204ENST00000525078 GPR82Q96P67 336 aa3.75□□□□□ -1.81
USP47-204ENST00000525078 TRIB3Q96RU7 358 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms