RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 SPINK9Q5DT21 86 aa9.78□□□□□ -0.84
LIMCH1-208ENST00000508501 DNM1P46Q6ZS02 220 aa9.78□□□□□ -0.84
LIMCH1-208ENST00000508501 GCSAMQ8N6F7 178 aa9.78□□□□□ -0.84
LIMCH1-208ENST00000508501 OR51G1Q8NGK1 321 aa9.78□□□□□ -0.84
LIMCH1-208ENST00000508501 ZNF714Q96N38 554 aa9.78□□□□□ -0.84
LIMCH1-208ENST00000508501 RAB1BQ9H0U4 201 aa9.78□□□□□ -0.84
LIMCH1-208ENST00000508501 AURKAIP1Q9NWT8 199 aaPredicted RBP9.78□□□□□ -0.84
LIMCH1-208ENST00000508501 TMEM56-RWDD3S4R434 201 aa9.78□□□□□ -0.84
LIMCH1-208ENST00000508501 TMSB15BA0A087X1C1 80 aa9.78□□□□□ -0.84
LIMCH1-208ENST00000508501 TRBV5-3A0A0A0MS03 114 aa9.78□□□□□ -0.84
LIMCH1-208ENST00000508501 MT-CO3P00414 261 aa9.78□□□□□ -0.84
LIMCH1-208ENST00000508501 DLX6P56179 175 aa9.78□□□□□ -0.84
LIMCH1-208ENST00000508501 B4GALNT1Q00973 533 aa9.78□□□□□ -0.84
LIMCH1-208ENST00000508501 DLK2Q6UY11 383 aa9.78□□□□□ -0.84
LIMCH1-208ENST00000508501 PGLYRP4Q96LB8 373 aa9.78□□□□□ -0.84
LIMCH1-208ENST00000508501 DEFB127Q9H1M4 99 aa9.78□□□□□ -0.84
LIMCH1-208ENST00000508501 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.77□□□□□ -0.84
LIMCH1-208ENST00000508501 LHFPL4Q7Z7J7 247 aa9.77□□□□□ -0.84
LIMCH1-208ENST00000508501 LRTM2Q8N967 370 aa9.77□□□□□ -0.84
LIMCH1-208ENST00000508501 ZNF296Q8WUU4 475 aaPredicted RBP9.77□□□□□ -0.84
LIMCH1-208ENST00000508501 MYH2Q9UKX2 1941 aa9.77□□□□□ -0.84
LIMCH1-208ENST00000508501 TRGV5A0A0B4J1U4 118 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 TRAV8-6A0A0B4J262 113 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 TRAV17A0A0B4J275 112 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 TRA2AQ13595 282 aaKnown RBP eCLIP9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 C14orf144Q96I85 54 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 CITED1Q99966 193 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 BEX4Q9NWD9 120 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 SMPXQ9UHP9 88 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 KLK13Q9UKR3 277 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 IGHV4-34P06331 123 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 FCGR2BP31994 310 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 TMEM95Q3KNT9 176 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 PLSCR4Q9NRQ2 329 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 A0A1W2PPC1 479 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 HYAL3O43820 417 aaPredicted RBP9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 TNFSF13O75888 250 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 RPL27AP46776 148 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 SRSF6Q13247 344 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 SPEM1Q8N4L4 309 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 KLHDC9Q8NEP7 349 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 OR4C13Q8NGP0 309 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 OR4A5Q8NH83 315 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 PLPPR1Q8TBJ4 325 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 SRSF12Q8WXF0 261 aaKnown RBP9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 SH3BGRL3Q9H299 93 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 INSIG2Q9Y5U4 225 aa9.77□□□□□ -0.85
LIMCH1-208ENST00000508501 TRBV5-5A0A0J9YX44 114 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 CDC42EP2O14613 210 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 ATXN8Q156A1 80 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 GPR82Q96P67 336 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 MYH1P12882 1939 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 MYH4Q9Y623 1939 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 C3orf80F5H4A9 247 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 RRHO14718 337 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 ATG4DQ86TL0 474 aaPredicted RBP9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 FBLIM1Q8WUP2 373 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 DIRC2Q96SL1 478 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 CLDN14O95500 239 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 ISG15P05161 165 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 NUBP1P53384 320 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 C1QL4Q86Z23 238 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 IMMP2LQ96T52 175 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 RNF7Q9UBF6 113 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 VKORC1L1Q8N0U8 176 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 KIR3DL3Q8N743 410 aa9.76□□□□□ -0.85
LIMCH1-208ENST00000508501 FAM208AQ9UK61 1670 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 IGHV3-43A0A0B4J1X8 118 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 IGHV3-43DP0DP04 118 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 SPATA46Q5T0L3 261 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 TMEM242Q9NWH2 141 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 ARID1BQ8NFD5 2236 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 GRIFINA4D1Z8 144 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 TNFSF15O95150 251 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 PDCD1Q15116 288 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 ANKRD33Q7Z3H0 272 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 TMEM101Q96IK0 257 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 TMEM160Q9NX00 188 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 HCFC2Q9Y5Z7 792 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 IGHV3-15A0A0B4J1V0 119 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 HSPE1P61604 102 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 CX3CL1P78423 397 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 COL10A1Q03692 680 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 OR10J3Q5JRS4 329 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 MMP17Q9ULZ9 603 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 IGHV3-64DA0A0J9YX35 117 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 A0A1B0GUT8 65 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 HOXA3O43365 443 aaPredicted RBP9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 SRP19P09132 144 aaKnown RBP9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 PMVKQ15126 192 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 ZNF479Q96JC4 524 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 METTL26Q96S19 204 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 PRR13Q9NZ81 148 aa9.75□□□□□ -0.85
LIMCH1-208ENST00000508501 URB1O60287 2271 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 TRBV20OR9-2A0A075B6H5 130 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 RNASE1P07998 156 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 SMAD4Q13485 552 aaKnown RBP9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 RLN3Q8WXF3 142 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 BADQ92934 168 aa9.74□□□□□ -0.85
LIMCH1-208ENST00000508501 OR2H1Q9GZK4 316 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms