RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 ZNF833PQ6ZTB9 187 aa12.7□□□□□ -0.38
LIME1-209ENST00000494776 C11orf44Q8N8P7 122 aa12.7□□□□□ -0.38
LIME1-209ENST00000494776 OR10J5Q8NHC4 309 aa12.7□□□□□ -0.38
LIME1-209ENST00000494776 ABHD14BQ96IU4 210 aa12.7□□□□□ -0.38
LIME1-209ENST00000494776 ST6GALNAC5Q9BVH7 336 aa12.7□□□□□ -0.38
LIME1-209ENST00000494776 PARP12Q9H0J9 701 aaKnown RBP12.7□□□□□ -0.38
LIME1-209ENST00000494776 C11orf54Q9H0W9 315 aaPredicted RBP12.7□□□□□ -0.38
LIME1-209ENST00000494776 IFI27L2Q9H2X8 130 aa12.7□□□□□ -0.38
LIME1-209ENST00000494776 GHITMQ9H3K2 345 aa12.7□□□□□ -0.38
LIME1-209ENST00000494776 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.7□□□□□ -0.38
LIME1-209ENST00000494776 TRAV18A0A075B6X5 111 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 IGKV1-6A0A0C4DH72 117 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 ITGB1BP1O14713 200 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 FGF16O43320 207 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 AMY1AP04745 511 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 AMY2AP04746 511 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 DTYMKP23919 212 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 LSAMPQ13449 338 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 ZNF260Q3ZCT1 412 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 IGSF11Q5DX21 431 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 GPR141Q7Z602 305 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 CENPVQ7Z7K6 275 aaPredicted RBP12.69□□□□□ -0.38
LIME1-209ENST00000494776 C5orf56Q8N8D9 126 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 NUDCD2Q8WVJ2 157 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 SLC25A38Q96DW6 304 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 GINS4Q9BRT9 223 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 MRPL20Q9BYC9 149 aaKnown RBP12.69□□□□□ -0.38
LIME1-209ENST00000494776 RDH8Q9NYR8 311 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 ZNF221Q9UK13 617 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 RNF150Q9ULK6 438 aa12.69□□□□□ -0.38
LIME1-209ENST00000494776 A0A0A6YYH2 397 aa12.68□□□□□ -0.38
LIME1-209ENST00000494776 A6NJ64 397 aa12.68□□□□□ -0.38
LIME1-209ENST00000494776 GPR12P47775 334 aa12.68□□□□□ -0.38
LIME1-209ENST00000494776 SRSF7Q16629 238 aaKnown RBP eCLIP12.68□□□□□ -0.38
LIME1-209ENST00000494776 PNLIPRP3Q17RR3 467 aa12.68□□□□□ -0.38
LIME1-209ENST00000494776 RPL39P5Q59GN2 51 aa12.68□□□□□ -0.38
LIME1-209ENST00000494776 GPR107Q5VW38 600 aa12.68□□□□□ -0.38
LIME1-209ENST00000494776 FAM71F2Q6NXP2 309 aa12.68□□□□□ -0.38
LIME1-209ENST00000494776 ANKRD13BQ86YJ7 626 aa12.68□□□□□ -0.38
LIME1-209ENST00000494776 SLC25A46Q96AG3 418 aa12.68□□□□□ -0.38
LIME1-209ENST00000494776 S100A16Q96FQ6 103 aaKnown RBP12.68□□□□□ -0.38
LIME1-209ENST00000494776 NABP2Q9BQ15 211 aa12.68□□□□□ -0.38
LIME1-209ENST00000494776 CABLES2Q9BTV7 478 aa12.68□□□□□ -0.38
LIME1-209ENST00000494776 DCSTAMPQ9H295 470 aa12.68□□□□□ -0.38
LIME1-209ENST00000494776 RBM7Q9Y580 266 aaKnown RBP12.68□□□□□ -0.38
LIME1-209ENST00000494776 FBXO24O75426 580 aa12.67□□□□□ -0.38
LIME1-209ENST00000494776 UBE2NLQ5JXB2 153 aa12.67□□□□□ -0.38
LIME1-209ENST00000494776 PRR31Q5SQ13 230 aa12.67□□□□□ -0.38
LIME1-209ENST00000494776 SAMD12Q8N8I0 201 aa12.67□□□□□ -0.38
LIME1-209ENST00000494776 OR8H1Q8NGG4 311 aa12.67□□□□□ -0.38
LIME1-209ENST00000494776 RASL11BQ9BPW5 248 aa12.67□□□□□ -0.38
LIME1-209ENST00000494776 TRBV6-7A0A0A0MS04 114 aa12.66□□□□□ -0.38
LIME1-209ENST00000494776 DIRAS3O95661 229 aa12.66□□□□□ -0.38
LIME1-209ENST00000494776 C2orf68Q2NKX9 166 aa12.66□□□□□ -0.38
LIME1-209ENST00000494776 Q6ZS49 121 aa12.66□□□□□ -0.38
LIME1-209ENST00000494776 Q8N6K4 173 aa12.66□□□□□ -0.38
LIME1-209ENST00000494776 OR5AU1Q8NGC0 362 aa12.66□□□□□ -0.38
LIME1-209ENST00000494776 KCTD12Q96CX2 325 aaKnown RBP12.66□□□□□ -0.38
LIME1-209ENST00000494776 RBMXL1Q96E39 390 aaKnown RBP12.66□□□□□ -0.38
LIME1-209ENST00000494776 ZNF251Q9BRH9 671 aa12.66□□□□□ -0.38
LIME1-209ENST00000494776 AGMATQ9BSE5 352 aa12.66□□□□□ -0.38
LIME1-209ENST00000494776 WNT10AQ9GZT5 417 aa12.66□□□□□ -0.38
LIME1-209ENST00000494776 NAA50Q9GZZ1 169 aaKnown RBP12.66□□□□□ -0.38
LIME1-209ENST00000494776 ABCG5Q9H222 651 aa12.66□□□□□ -0.38
LIME1-209ENST00000494776 H7C2Y5 167 aa12.65□□□□□ -0.38
LIME1-209ENST00000494776 GABARAPO95166 117 aa12.65□□□□□ -0.38
LIME1-209ENST00000494776 CTXN2P0C2S0 81 aa12.65□□□□□ -0.38
LIME1-209ENST00000494776 OR8U9P0C7N5 309 aa12.65□□□□□ -0.38
LIME1-209ENST00000494776 CD28P10747 220 aa12.65□□□□□ -0.38
LIME1-209ENST00000494776 RORCP51449 518 aa12.65□□□□□ -0.38
LIME1-209ENST00000494776 F2RL1P55085 397 aa12.65□□□□□ -0.38
LIME1-209ENST00000494776 MMDQ15546 238 aa12.65□□□□□ -0.38
LIME1-209ENST00000494776 HIST2H2BDQ6DRA6 164 aa12.65□□□□□ -0.38
LIME1-209ENST00000494776 GLDNQ6ZMI3 551 aaPredicted RBP12.65□□□□□ -0.38
LIME1-209ENST00000494776 SLC35E3Q7Z769 313 aa12.65□□□□□ -0.38
LIME1-209ENST00000494776 Q8N9W7 124 aa12.65□□□□□ -0.38
LIME1-209ENST00000494776 OR8U1Q8NH10 309 aa12.65□□□□□ -0.38
LIME1-209ENST00000494776 TOLLIPQ9H0E2 274 aa12.65□□□□□ -0.38
LIME1-209ENST00000494776 OR2D2Q9H210 308 aa12.65□□□□□ -0.38
LIME1-209ENST00000494776 LIN7CQ9NUP9 197 aaKnown RBP12.65□□□□□ -0.38
LIME1-209ENST00000494776 COMMD3Q9UBI1 195 aa12.65□□□□□ -0.38
LIME1-209ENST00000494776 IGKV1D-8A0A087WSZ0 117 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 OR5H14A6NHG9 310 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 XRCC3O43542 346 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 SSX5O60225 188 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 TFAP2AP05549 437 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 CSF1P09603 554 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 CT45A6P0DMU7 189 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 CT45A5P0DMU8 189 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 CT45A7P0DMV0 189 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 MC5RP33032 325 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 ALDH3B2P48448 385 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 ACTBP60709 375 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 CTF1Q16619 201 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 NSUN5P1Q3KNT7 163 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 TMEM69Q5SWH9 247 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 FAM131AQ6UXB0 335 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 TREML4Q6UXN2 200 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 FOXRED2Q8IWF2 684 aa12.64□□□□□ -0.39
LIME1-209ENST00000494776 DRAXINQ8NBI3 349 aaPredicted RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms