RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 TMEM217Q8N7C4 229 aa17.59■□□□□ 0.41
CCDC88B-208ENST00000492980 PPP1R35Q8TAP8 253 aa17.59■□□□□ 0.41
CCDC88B-208ENST00000492980 ZGRF1Q86YA3 2104 aa17.59■□□□□ 0.41
CCDC88B-208ENST00000492980 DCHS1Q96JQ0 3298 aa17.59■□□□□ 0.41
CCDC88B-208ENST00000492980 AGPAT2O15120 278 aa17.59■□□□□ 0.41
CCDC88B-208ENST00000492980 TXNL1O43396 289 aa17.59■□□□□ 0.41
CCDC88B-208ENST00000492980 ADH4P08319 380 aa17.59■□□□□ 0.41
CCDC88B-208ENST00000492980 FHITP49789 147 aa17.59■□□□□ 0.41
CCDC88B-208ENST00000492980 SPAG16Q8N0X2 631 aa17.59■□□□□ 0.41
CCDC88B-208ENST00000492980 TSNAXQ99598 290 aaKnown RBP17.59■□□□□ 0.41
CCDC88B-208ENST00000492980 JKAMPQ9P055 326 aa17.59■□□□□ 0.41
CCDC88B-208ENST00000492980 STRAPQ9Y3F4 350 aaKnown RBP17.59■□□□□ 0.41
CCDC88B-208ENST00000492980 ATMQ13315 3056 aa17.58■□□□□ 0.41
CCDC88B-208ENST00000492980 H3BP45 60 aa17.58■□□□□ 0.4
CCDC88B-208ENST00000492980 SYNGR2O43760 224 aa17.58■□□□□ 0.4
CCDC88B-208ENST00000492980 C1QL1O75973 258 aa17.58■□□□□ 0.4
CCDC88B-208ENST00000492980 ATP6V0CP27449 155 aa17.58■□□□□ 0.4
CCDC88B-208ENST00000492980 CD80P33681 288 aa17.58■□□□□ 0.4
CCDC88B-208ENST00000492980 CAMLGP49069 296 aa17.58■□□□□ 0.4
CCDC88B-208ENST00000492980 TNFAIP6P98066 277 aaPredicted RBP17.58■□□□□ 0.4
CCDC88B-208ENST00000492980 CATR1Q13166 79 aa17.58■□□□□ 0.4
CCDC88B-208ENST00000492980 CR1LQ2VPA4 569 aa17.58■□□□□ 0.4
CCDC88B-208ENST00000492980 TMEM108Q6UXF1 575 aa17.58■□□□□ 0.4
CCDC88B-208ENST00000492980 ZNRF1Q8ND25 227 aa17.58■□□□□ 0.4
CCDC88B-208ENST00000492980 IL19Q9UHD0 177 aa17.58■□□□□ 0.4
CCDC88B-208ENST00000492980 CARHSP1Q9Y2V2 147 aaKnown RBP17.58■□□□□ 0.4
CCDC88B-208ENST00000492980 MMP24Q9Y5R2 645 aa17.58■□□□□ 0.4
CCDC88B-208ENST00000492980 WSB1Q9Y6I7 421 aa17.58■□□□□ 0.4
CCDC88B-208ENST00000492980 RP1L1Q8IWN7 2480 aaPredicted RBP17.58■□□□□ 0.4
CCDC88B-208ENST00000492980 DEFB108AA8MXU0 73 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 F8W036 122 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 RNASEK-C17orf49H0YIS7 233 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 K7N7A8 449 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 BRWD1-AS2P59051 145 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 MIDNQ504T8 468 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 OR2B11Q5JQS5 317 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 FAM201AQ5SY85 155 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 BTNL3Q6UXE8 466 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 TMEM182Q6ZP80 229 aaPredicted RBP17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 FAM222BQ8WU58 562 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 GCM1Q9NP62 436 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 C19orf12Q9NSK7 152 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 DMXL2Q8TDJ6 3036 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 ST8SIA5O15466 376 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 CD5P06127 495 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 GZMHP20718 246 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 ZNF616Q08AN1 781 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 GUCA2BQ16661 112 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 STX12Q86Y82 276 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 WFDC8Q8IUA0 241 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 TCTEX1D2Q8WW35 142 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 AGMATQ9BSE5 352 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 NKX6-2Q9C056 277 aaPredicted RBP17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 COA4Q9NYJ1 87 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 PSG11Q9UQ72 335 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 MSRB2Q9Y3D2 182 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 RFNGQ9Y644 331 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 CACNA1DQ01668 2161 aa17.57■□□□□ 0.4
CCDC88B-208ENST00000492980 C17orf98A8MV24 154 aa17.56■□□□□ 0.4
CCDC88B-208ENST00000492980 TSPAN15O95858 294 aa17.56■□□□□ 0.4
CCDC88B-208ENST00000492980 PRH1P02810 166 aa17.56■□□□□ 0.4
CCDC88B-208ENST00000492980 P0C879 139 aa17.56■□□□□ 0.4
CCDC88B-208ENST00000492980 SULT1A1P50225 295 aa17.56■□□□□ 0.4
CCDC88B-208ENST00000492980 TMEM267Q0VDI3 215 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-208ENST00000492980 ZNF816Q0VGE8 651 aaPredicted RBP17.56■□□□□ 0.4
CCDC88B-208ENST00000492980 LTC4SQ16873 150 aa17.56■□□□□ 0.4
CCDC88B-208ENST00000492980 ATP5SQ99766 215 aa17.56■□□□□ 0.4
CCDC88B-208ENST00000492980 RNF7Q9UBF6 113 aa17.56■□□□□ 0.4
CCDC88B-208ENST00000492980 THBDP07204 575 aa17.56■□□□□ 0.4
CCDC88B-208ENST00000492980 IAPPP10997 89 aa17.56■□□□□ 0.4
CCDC88B-208ENST00000492980 PTAFRP25105 342 aa17.56■□□□□ 0.4
CCDC88B-208ENST00000492980 ZNF273Q14593 569 aa17.56■□□□□ 0.4
CCDC88B-208ENST00000492980 SVBPQ8N300 66 aa17.56■□□□□ 0.4
CCDC88B-208ENST00000492980 SEC11CQ9BY50 192 aa17.56■□□□□ 0.4
CCDC88B-208ENST00000492980 DPRXA6NFQ7 191 aa17.55■□□□□ 0.4
CCDC88B-208ENST00000492980 TRIM77I1YAP6 450 aa17.55■□□□□ 0.4
CCDC88B-208ENST00000492980 TOR1AO14656 332 aa17.55■□□□□ 0.4
CCDC88B-208ENST00000492980 S1PR2O95136 353 aa17.55■□□□□ 0.4
CCDC88B-208ENST00000492980 CLDN1O95832 211 aa17.55■□□□□ 0.4
CCDC88B-208ENST00000492980 Q3ZCU0 254 aa17.55■□□□□ 0.4
CCDC88B-208ENST00000492980 ZNF66Q6ZN08 573 aa17.55■□□□□ 0.4
CCDC88B-208ENST00000492980 PUSL1Q8N0Z8 303 aaKnown RBP17.55■□□□□ 0.4
CCDC88B-208ENST00000492980 OR2G3Q8NGZ4 309 aa17.55■□□□□ 0.4
CCDC88B-208ENST00000492980 KCNJ16Q9NPI9 418 aa17.55■□□□□ 0.4
CCDC88B-208ENST00000492980 JPT1Q9UK76 154 aa17.55■□□□□ 0.4
CCDC88B-208ENST00000492980 DNASE2O00115 360 aaPredicted RBP17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 FAM87AP0C7U9 286 aa17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 G6PCP35575 357 aa17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 SNCAP37840 140 aa17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 DVL1P1P54792 670 aaPredicted RBP17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 TCTEX1D1Q8N7M0 179 aa17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 PSENENQ9NZ42 101 aa17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 LINC00473A8K010 186 aa17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 FAM157AC9JC47 383 aa17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 C9JQL5 133 aa17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 FAM90A26D6RGX4 464 aa17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 KRASP01116 189 aa17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 SELLP14151 372 aa17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 TNFSF4P23510 183 aa17.54■□□□□ 0.4
CCDC88B-208ENST00000492980 EDDM3BP56851 147 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms