RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 TUSC2O75896 110 aa5.34□□□□□ -1.56
VPS13D-209ENST00000487188 SLC25A6P12236 298 aa5.34□□□□□ -1.56
VPS13D-209ENST00000487188 OTX2P32243 289 aa5.34□□□□□ -1.56
VPS13D-209ENST00000487188 FUT6P51993 359 aa5.34□□□□□ -1.56
VPS13D-209ENST00000487188 GFERP55789 205 aa5.34□□□□□ -1.56
VPS13D-209ENST00000487188 YPEL5P62699 121 aa5.34□□□□□ -1.56
VPS13D-209ENST00000487188 ACSF3Q4G176 576 aaPredicted RBP5.34□□□□□ -1.56
VPS13D-209ENST00000487188 RTL10Q7L3V2 364 aa5.34□□□□□ -1.56
VPS13D-209ENST00000487188 LINC01551Q86U37 167 aa5.34□□□□□ -1.56
VPS13D-209ENST00000487188 GCNT2Q8N0V5 402 aa5.34□□□□□ -1.56
VPS13D-209ENST00000487188 ZNF611Q8N823 705 aa5.34□□□□□ -1.56
VPS13D-209ENST00000487188 UHRF2Q96PU4 802 aa5.34□□□□□ -1.56
VPS13D-209ENST00000487188 NRN1Q9NPD7 142 aa5.34□□□□□ -1.56
VPS13D-209ENST00000487188 GPR27Q9NS67 375 aa5.34□□□□□ -1.56
VPS13D-209ENST00000487188 ERRFI1Q9UJM3 462 aaPredicted RBP5.34□□□□□ -1.56
VPS13D-209ENST00000487188 FBXL7Q9UJT9 491 aa5.34□□□□□ -1.56
VPS13D-209ENST00000487188 LRP5LA4QPB2 252 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 DHHO43323 396 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 GALR2O43603 387 aaPredicted RBP5.33□□□□□ -1.56
VPS13D-209ENST00000487188 ARL16Q0P5N6 197 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 RPEL1Q2QD12 228 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 ACSM6Q6P461 480 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 ZNF439Q8NDP4 499 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 SLC24A4Q8NFF2 622 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 SSC4DQ8WTU2 575 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 AP1S3Q96PC3 154 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 ALKBH3Q96Q83 286 aaPredicted RBP5.33□□□□□ -1.56
VPS13D-209ENST00000487188 PNRC2Q9NPJ4 139 aaKnown RBP5.33□□□□□ -1.56
VPS13D-209ENST00000487188 LIN7CQ9NUP9 197 aaKnown RBP5.33□□□□□ -1.56
VPS13D-209ENST00000487188 YLPM1P49750 1951 aaKnown RBP5.33□□□□□ -1.56
VPS13D-209ENST00000487188 RALGAPA1Q6GYQ0 2036 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 A0A0G2JRQ6 117 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 TRAPPC2LH3BP13 241 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 HYPMO75409 117 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 NAPSAO96009 420 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 GLB1P16278 677 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 CCNOP22674 350 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 ATP5G3P48201 142 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 ODF3L1Q8IXM7 274 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 FAM131CQ96AQ9 280 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 TMEM204Q9BSN7 226 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 PLSCR2Q9NRY7 297 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 SERTAD4Q9NUC0 356 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 WNT16Q9UBV4 365 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 HSPB7Q9UBY9 170 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 RNF115Q9Y4L5 304 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 TIMM9Q9Y5J7 89 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 CHD7Q9P2D1 2997 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 A0A1W2PN81 502 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 DPRXA6NFQ7 191 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 HS3ST1O14792 307 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 HSBP1O75506 76 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 CAPZBP47756 277 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 FOXL1Q12952 345 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 KIAA1644Q3SXP7 199 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 PDLIM3Q53GG5 364 aaPredicted RBP5.33□□□□□ -1.56
VPS13D-209ENST00000487188 TMEM196Q5HYL7 178 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 MKXQ8IYA7 352 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 LYG1Q8N1E2 194 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 APOBEC3DQ96AK3 386 aaPredicted RBP5.33□□□□□ -1.56
VPS13D-209ENST00000487188 CLDN23Q96B33 292 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 HIPK2Q9H2X6 1198 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 PRUNE2Q8WUY3 3088 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 COL4A6Q14031 1691 aa5.33□□□□□ -1.56
VPS13D-209ENST00000487188 IGHV3-15A0A0B4J1V0 119 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 IGLC2P0DOY2 106 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 IGLC3P0DOY3 106 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 EDDM3BP56851 147 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 TGFBR3Q03167 851 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 RDH5Q92781 318 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 BCL2L2Q92843 193 aaPredicted RBP5.32□□□□□ -1.56
VPS13D-209ENST00000487188 GMPPAQ96IJ6 420 aaPredicted RBP5.32□□□□□ -1.56
VPS13D-209ENST00000487188 LOXL4Q96JB6 756 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 NCOR1P1Q9H4R4 102 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 ZNF703Q9H7S9 590 aaPredicted RBP5.32□□□□□ -1.56
VPS13D-209ENST00000487188 HSBP1L1C9JCN9 74 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 K7EP13 123 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 SLC17A3O00476 420 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 IGKV1D-33P01593 117 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 IGKV1-33P01594 117 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 CLDN15P56746 228 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 Q56UQ5 140 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 RAET1LQ5VY80 246 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 WDR73Q6P4I2 378 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 ZDHHC23Q8IYP9 409 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 NUDT11Q96G61 164 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 DERL1Q9BUN8 251 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 UNC13CQ8NB66 2214 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 CEP290O15078 2479 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 IGKV1-27A0A075B6S5 117 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 IGKV1-12A0A0C4DH73 117 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 A0A1W2PRS3 328 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 SIRPB1O00241 398 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 SH2D1BO14796 132 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 NDUFB8O95169 186 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 IGKV1D-12P01611 117 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 DEFA4P12838 97 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 TCL1AP56279 114 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 OR8I2Q8N0Y5 310 aa5.32□□□□□ -1.56
VPS13D-209ENST00000487188 LMX1AQ8TE12 382 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms