RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 SLC6A1P30531 599 aa17.12■□□□□ 0.33
COL9A3-211ENST00000477612 RPL23AP62750 156 aaKnown RBP17.12■□□□□ 0.33
COL9A3-211ENST00000477612 OXLD1Q5BKU9 147 aa17.12■□□□□ 0.33
COL9A3-211ENST00000477612 C22orf42Q6IC83 251 aa17.12■□□□□ 0.33
COL9A3-211ENST00000477612 NR2C2APQ86WQ0 139 aa17.12■□□□□ 0.33
COL9A3-211ENST00000477612 EDARADDQ8WWZ3 215 aa17.12■□□□□ 0.33
COL9A3-211ENST00000477612 RBMXL1Q96E39 390 aaKnown RBP17.12■□□□□ 0.33
COL9A3-211ENST00000477612 GON7Q9BXV9 100 aa17.12■□□□□ 0.33
COL9A3-211ENST00000477612 TXNL4BQ9NX01 149 aaKnown RBP17.12■□□□□ 0.33
COL9A3-211ENST00000477612 RAB27BO00194 218 aa17.11■□□□□ 0.33
COL9A3-211ENST00000477612 ST8SIA5O15466 376 aa17.11■□□□□ 0.33
COL9A3-211ENST00000477612 IGF1P05019 195 aa17.11■□□□□ 0.33
COL9A3-211ENST00000477612 SOX6P35712 828 aa17.11■□□□□ 0.33
COL9A3-211ENST00000477612 CEACAM6P40199 344 aa17.11■□□□□ 0.33
COL9A3-211ENST00000477612 MOGAT2Q3SYC2 334 aa17.11■□□□□ 0.33
COL9A3-211ENST00000477612 OR10R2Q8NGX6 335 aa17.11■□□□□ 0.33
COL9A3-211ENST00000477612 RAB3CQ96E17 227 aa17.11■□□□□ 0.33
COL9A3-211ENST00000477612 HSPB9Q9BQS6 159 aa17.11■□□□□ 0.33
COL9A3-211ENST00000477612 PARP12Q9H0J9 701 aaKnown RBP17.11■□□□□ 0.33
COL9A3-211ENST00000477612 IGKV1-6A0A0C4DH72 117 aa17.1■□□□□ 0.33
COL9A3-211ENST00000477612 CD33P20138 364 aa17.1■□□□□ 0.33
COL9A3-211ENST00000477612 PSMB9P28065 219 aa17.1■□□□□ 0.33
COL9A3-211ENST00000477612 ACTBP60709 375 aa17.1■□□□□ 0.33
COL9A3-211ENST00000477612 CFHR3Q02985 330 aa17.1■□□□□ 0.33
COL9A3-211ENST00000477612 PNLIPRP3Q17RR3 467 aa17.1■□□□□ 0.33
COL9A3-211ENST00000477612 TEX38Q6PEX7 206 aa17.1■□□□□ 0.33
COL9A3-211ENST00000477612 ZNF773Q6PK81 442 aa17.1■□□□□ 0.33
COL9A3-211ENST00000477612 RNF152Q8N8N0 203 aa17.1■□□□□ 0.33
COL9A3-211ENST00000477612 NPBQ8NG41 125 aa17.1■□□□□ 0.33
COL9A3-211ENST00000477612 PHF21AQ96BD5 680 aa17.1■□□□□ 0.33
COL9A3-211ENST00000477612 RITA1Q96K30 269 aa17.1■□□□□ 0.33
COL9A3-211ENST00000477612 CHCHD6Q9BRQ6 235 aa17.1■□□□□ 0.33
COL9A3-211ENST00000477612 C11orf54Q9H0W9 315 aaPredicted RBP17.1■□□□□ 0.33
COL9A3-211ENST00000477612 OR1A1Q9P1Q5 309 aa17.1■□□□□ 0.33
COL9A3-211ENST00000477612 STUB1Q9UNE7 303 aa17.1■□□□□ 0.33
COL9A3-211ENST00000477612 TRDCB7Z8K6 153 aa17.09■□□□□ 0.33
COL9A3-211ENST00000477612 MFNGO00587 321 aa17.09■□□□□ 0.33
COL9A3-211ENST00000477612 NDUFA3O95167 84 aa17.09■□□□□ 0.33
COL9A3-211ENST00000477612 PF4P02776 101 aa17.09■□□□□ 0.33
COL9A3-211ENST00000477612 CT45A6P0DMU7 189 aa17.09■□□□□ 0.33
COL9A3-211ENST00000477612 CT45A5P0DMU8 189 aa17.09■□□□□ 0.33
COL9A3-211ENST00000477612 CT45A7P0DMV0 189 aa17.09■□□□□ 0.33
COL9A3-211ENST00000477612 MMDQ15546 238 aa17.09■□□□□ 0.33
COL9A3-211ENST00000477612 KHDC1LQ5JSQ8 128 aa17.09■□□□□ 0.33
COL9A3-211ENST00000477612 TPRA1Q86W33 373 aa17.09■□□□□ 0.33
COL9A3-211ENST00000477612 ABHD14BQ96IU4 210 aa17.09■□□□□ 0.33
COL9A3-211ENST00000477612 METTL21EPA6NDL7 271 aa17.08■□□□□ 0.32
COL9A3-211ENST00000477612 OR5H14A6NHG9 310 aa17.08■□□□□ 0.32
COL9A3-211ENST00000477612 HSPA12AO43301 675 aa17.08■□□□□ 0.32
COL9A3-211ENST00000477612 RRP9O43818 475 aaKnown RBP17.08■□□□□ 0.32
COL9A3-211ENST00000477612 PROP1O75360 226 aa17.08■□□□□ 0.32
COL9A3-211ENST00000477612 DIRAS3O95661 229 aa17.08■□□□□ 0.32
COL9A3-211ENST00000477612 HLA-DRB1P01911 266 aa17.08■□□□□ 0.32
COL9A3-211ENST00000477612 ELANEP08246 267 aa17.08■□□□□ 0.32
COL9A3-211ENST00000477612 CD3GP09693 182 aa17.08■□□□□ 0.32
COL9A3-211ENST00000477612 GADD45AP24522 165 aa17.08■□□□□ 0.32
COL9A3-211ENST00000477612 SRSF7Q16629 238 aaKnown RBP eCLIP17.08■□□□□ 0.32
COL9A3-211ENST00000477612 RPL39P5Q59GN2 51 aa17.08■□□□□ 0.32
COL9A3-211ENST00000477612 ETV3LQ6ZN32 361 aa17.08■□□□□ 0.32
COL9A3-211ENST00000477612 REC114Q7Z4M0 266 aa17.08■□□□□ 0.32
COL9A3-211ENST00000477612 OR4A4PQ8NGN8 299 aa17.08■□□□□ 0.32
COL9A3-211ENST00000477612 ZNF107Q9UII5 783 aaPredicted RBP17.08■□□□□ 0.32
COL9A3-211ENST00000477612 NOTOA8MTQ0 251 aa17.07■□□□□ 0.32
COL9A3-211ENST00000477612 NBR2O15453 112 aa17.07■□□□□ 0.32
COL9A3-211ENST00000477612 FCGR3AP08637 254 aa17.07■□□□□ 0.32
COL9A3-211ENST00000477612 HIST1H1DP16402 221 aaKnown RBP17.07■□□□□ 0.32
COL9A3-211ENST00000477612 CNTFRP26992 372 aa17.07■□□□□ 0.32
COL9A3-211ENST00000477612 MC5RP33032 325 aa17.07■□□□□ 0.32
COL9A3-211ENST00000477612 SERPINB10P48595 397 aa17.07■□□□□ 0.32
COL9A3-211ENST00000477612 THBS3P49746 956 aa17.07■□□□□ 0.32
COL9A3-211ENST00000477612 FOXE3Q13461 319 aa17.07■□□□□ 0.32
COL9A3-211ENST00000477612 LINC00482Q8N8I6 264 aa17.07■□□□□ 0.32
COL9A3-211ENST00000477612 OR5AN1Q8NGI8 311 aa17.07■□□□□ 0.32
COL9A3-211ENST00000477612 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.07■□□□□ 0.324e-7■■□□□ 13.3
COL9A3-211ENST00000477612 SSR3Q9UNL2 185 aa17.07■□□□□ 0.32
COL9A3-211ENST00000477612 A0A0B4J203 849 aa17.06■□□□□ 0.32
COL9A3-211ENST00000477612 DUS4LO95620 317 aaKnown RBP17.06■□□□□ 0.32
COL9A3-211ENST00000477612 IGHG4P01861 327 aa17.06■□□□□ 0.32
COL9A3-211ENST00000477612 MRPS15P82914 257 aaKnown RBP17.06■□□□□ 0.32
COL9A3-211ENST00000477612 KIR2DS1Q14954 304 aa17.06■□□□□ 0.32
COL9A3-211ENST00000477612 ARL6IP1Q15041 203 aa17.06■□□□□ 0.32
COL9A3-211ENST00000477612 C5orf64Q2M2E5 130 aa17.06■□□□□ 0.32
COL9A3-211ENST00000477612 Q6ZS49 121 aa17.06■□□□□ 0.32
COL9A3-211ENST00000477612 RCC1LQ96I51 464 aaKnown RBP17.06■□□□□ 0.32
COL9A3-211ENST00000477612 RNF5Q99942 180 aa17.06■□□□□ 0.32
COL9A3-211ENST00000477612 CABLES2Q9BTV7 478 aa17.06■□□□□ 0.32
COL9A3-211ENST00000477612 GAB2Q9UQC2 676 aa17.06■□□□□ 0.32
COL9A3-211ENST00000477612 H0YJW9 148 aa17.05■□□□□ 0.32
COL9A3-211ENST00000477612 FABP7O15540 132 aa17.05■□□□□ 0.32
COL9A3-211ENST00000477612 SLC2A2P11168 524 aaPredicted RBP17.05■□□□□ 0.32
COL9A3-211ENST00000477612 IGLL1P15814 213 aa17.05■□□□□ 0.32
COL9A3-211ENST00000477612 GNB3P16520 340 aa17.05■□□□□ 0.32
COL9A3-211ENST00000477612 PPIFP30405 207 aaKnown RBP17.05■□□□□ 0.32
COL9A3-211ENST00000477612 MYCNOSP40205 109 aa17.05■□□□□ 0.32
COL9A3-211ENST00000477612 CDX1P47902 265 aaPredicted RBP17.05■□□□□ 0.32
COL9A3-211ENST00000477612 KCTD21Q4G0X4 260 aa17.05■□□□□ 0.32
COL9A3-211ENST00000477612 FAM131AQ6UXB0 335 aa17.05■□□□□ 0.32
COL9A3-211ENST00000477612 C18orf65Q6ZTR6 163 aa17.05■□□□□ 0.32
COL9A3-211ENST00000477612 OR51E2Q9H255 320 aa17.05■□□□□ 0.32
COL9A3-211ENST00000477612 NECAP2Q9NVZ3 263 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms