RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ZNF426Q9BUY5 554 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 SMDT1Q9H4I9 107 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 CCL26Q9Y258 94 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 PUS1Q9Y606 427 aaKnown RBP eCLIP1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 MINOS1-NBL1R4GNA1 71 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 ZNF407Q9C0G0 2248 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 DOCK6Q96HP0 2047 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 NPATQ14207 1427 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 SLIT2O94813 1529 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 ZNF638Q14966 1978 aaKnown RBP1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 TRGV4A0A0C4DH28 118 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 A0A0J9YX75 114 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 C19orf71A6NCJ1 209 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 CCRL2O00421 344 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 TRAPPC3O43617 180 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 STK16O75716 305 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 IGLV3-27P01718 113 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 OCMP0CE72 109 aaPredicted RBP1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 ESDP10768 282 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 SLC25A16P16260 332 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 ZNF7P17097 686 aaPredicted RBP1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 BLVRBP30043 206 aaPredicted RBP1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 OPRM1P35372 400 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 HSPA9P38646 679 aaKnown RBP1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 LPAR6P43657 344 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 OR1E2P47887 323 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 DAPP51397 102 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 H2BFSP57053 126 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 FGF12P61328 243 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 DAD1P61803 113 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 TMEM176BQ3YBM2 270 aaPredicted RBP1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 SDHAF4Q5VUM1 108 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 PDPK2PQ6A1A2 396 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 CCDC112Q8NEF3 446 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 OR10A6Q8NH74 314 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 EIF5A2Q9GZV4 153 aaKnown RBP1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 C11orf1Q9H5F2 150 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 IMP3Q9NV31 184 aaKnown RBP1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 TP53TG1Q9Y2A0 90 aa1.16□□□□□ -2.22
CCDC88A-212ENST00000474059 COL4A2P08572 1712 aa1.15□□□□□ -2.22
CCDC88A-212ENST00000474059 COPEO14579 308 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 AZIN1O14977 448 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 ATP8B1O43520 1251 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 ATP5G1P05496 136 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 CRYBA1P05813 215 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 LINC00614P0C842 121 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 MIPP30301 263 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 GABRA4P48169 554 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 RWDD2BP57060 319 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 TSPEAR-AS2P59090 65 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 TMEM267Q0VDI3 215 aaPredicted RBP1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 LCN8Q6JVE9 175 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 RASL11AQ6T310 242 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 PLEKHG7Q6ZR37 379 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 ZNF767PQ75MW2 155 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 ATP5L2Q7Z4Y8 100 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 CD302Q8IX05 232 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 Q8NDZ9 215 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 SLC37A2Q8TED4 501 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 DNAJB3Q8WWF6 145 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 TLCD1Q96CP7 247 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 OR7D2Q96RA2 312 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 TBX5Q99593 518 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 MGLLQ99685 303 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 MROQ9BYG7 248 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 PARVAQ9NVD7 372 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 PSORS1C2Q9UIG4 136 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 SNX12Q9UMY4 172 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 ALG5Q9Y673 324 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 VWDEQ8N2E2 1590 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 THSD7AQ9UPZ6 1657 aa1.15□□□□□ -2.23
CCDC88A-212ENST00000474059 STRCP1A6NGW2 1772 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 IGHV3-73A0A0B4J1V6 119 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 TINCRA0A1B0GVN0 87 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 DHRS12A0PJE2 317 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 PCNX2A6NKB5 2137 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 ITGB1BP1O14713 200 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 MRASO14807 208 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 ZW10O43264 779 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 COCHO43405 550 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 HPGDSO60760 199 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 YEATS4O95619 227 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 CD7P09564 240 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 P0DMU3 169 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 FAM231AP0DMU4 169 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 FAM231CP0DMU5 169 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 HIST1H1CP16403 213 aaKnown RBP1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 CXCL2P19875 107 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 CXCL3P19876 107 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 NPPCP23582 126 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 ATP6V0CP27449 155 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 CD40LGP29965 261 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 OR10J1P30954 320 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 HERVK_113P63121 156 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 HPCAP84074 193 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 DNM1P34Q6PK57 102 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 DRAM2Q6UX65 266 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 CCDC121Q6ZUS5 278 aa1.14□□□□□ -2.23
CCDC88A-212ENST00000474059 FAM19A5Q7Z5A7 132 aaPredicted RBP1.14□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms