RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 HABP2Q14520 560 aaPredicted RBP16.01■□□□□ 0.15
VIM-203ENST00000469543 SOHLH1Q5JUK2 328 aa16.01■□□□□ 0.15
VIM-203ENST00000469543 OR13A1Q8NGR1 328 aa16.01■□□□□ 0.15
VIM-203ENST00000469543 HES4Q9HCC6 221 aa16.01■□□□□ 0.15
VIM-203ENST00000469543 MUC6Q6W4X9 2439 aa16.01■□□□□ 0.15
VIM-203ENST00000469543 OR5H1A6NKK0 313 aa16.01■□□□□ 0.15
VIM-203ENST00000469543 NPIPB11E5RHQ5 1161 aa16.01■□□□□ 0.15
VIM-203ENST00000469543 RPL23AP62750 156 aaKnown RBP16.01■□□□□ 0.15
VIM-203ENST00000469543 COL10A1Q03692 680 aa16.01■□□□□ 0.15
VIM-203ENST00000469543 EDDM3AQ14507 147 aa16.01■□□□□ 0.15
VIM-203ENST00000469543 AKR1C8PQ5T2L2 129 aa16.01■□□□□ 0.15
VIM-203ENST00000469543 OR8G2PQ6IF36 304 aa16.01■□□□□ 0.15
VIM-203ENST00000469543 LINC00518Q8N0U6 118 aa16.01■□□□□ 0.15
VIM-203ENST00000469543 STARD4Q96DR4 205 aa16.01■□□□□ 0.15
VIM-203ENST00000469543 RPRMQ9NS64 109 aa16.01■□□□□ 0.15
VIM-203ENST00000469543 APC2O95996 2303 aa16■□□□□ 0.15
VIM-203ENST00000469543 IGHV1-18A0A0C4DH31 117 aa16■□□□□ 0.15
VIM-203ENST00000469543 A0A1W2PPE3 182 aa16■□□□□ 0.15
VIM-203ENST00000469543 C17orf98A8MV24 154 aa16■□□□□ 0.15
VIM-203ENST00000469543 BAXQ07812 192 aa16■□□□□ 0.15
VIM-203ENST00000469543 ACSF3Q4G176 576 aaPredicted RBP16■□□□□ 0.15
VIM-203ENST00000469543 ACP7Q6ZNF0 438 aa16■□□□□ 0.15
VIM-203ENST00000469543 PBDC1Q9BVG4 233 aa16■□□□□ 0.15
VIM-203ENST00000469543 K7EM74 188 aa16■□□□□ 0.15
VIM-203ENST00000469543 SNRPEP62304 92 aaKnown RBP16■□□□□ 0.15
VIM-203ENST00000469543 LCN15Q6UWW0 184 aa16■□□□□ 0.15
VIM-203ENST00000469543 COMMD1Q8N668 190 aa16■□□□□ 0.15
VIM-203ENST00000469543 CYB561D1Q8N8Q1 229 aa16■□□□□ 0.15
VIM-203ENST00000469543 TRAV17A0A0B4J275 112 aa15.99■□□□□ 0.15
VIM-203ENST00000469543 COX5AP20674 150 aa15.99■□□□□ 0.15
VIM-203ENST00000469543 TAS2R30P59541 319 aa15.99■□□□□ 0.15
VIM-203ENST00000469543 UTF1Q5T230 341 aa15.99■□□□□ 0.15
VIM-203ENST00000469543 VHLLQ6RSH7 139 aa15.99■□□□□ 0.15
VIM-203ENST00000469543 OR2Z1Q8NG97 314 aa15.99■□□□□ 0.15
VIM-203ENST00000469543 KCNIP1Q9NZI2 227 aa15.99■□□□□ 0.15
VIM-203ENST00000469543 C1QTNF9BB2RNN3 333 aa15.99■□□□□ 0.15
VIM-203ENST00000469543 HMGB3O15347 200 aaKnown RBP15.99■□□□□ 0.15
VIM-203ENST00000469543 OR2B8PP59922 312 aa15.99■□□□□ 0.15
VIM-203ENST00000469543 ADAM5Q6NVV9 412 aa15.99■□□□□ 0.15
VIM-203ENST00000469543 CD177Q8N6Q3 437 aa15.99■□□□□ 0.15
VIM-203ENST00000469543 RAB40CQ96S21 281 aa15.99■□□□□ 0.15
VIM-203ENST00000469543 ZNF71Q9NQZ8 489 aaPredicted RBP15.99■□□□□ 0.15
VIM-203ENST00000469543 WSB1Q9Y6I7 421 aa15.99■□□□□ 0.15
VIM-203ENST00000469543 IGHV3OR15-7A0A075B7D8 119 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 IGHV2OR16-5A0A0B4J2B6 119 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 TMEM30CPA0ZSE6 113 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 AQP7O14520 342 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 ST8SIA5O15466 376 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 S1PR2O95136 353 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 IGFL2Q6UWQ7 119 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 MOB1BQ7L9L4 216 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 GNPNAT1Q96EK6 184 aaPredicted RBP15.98■□□□□ 0.15
VIM-203ENST00000469543 CLN8Q9UBY8 286 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 LINC00473A8K010 186 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 PRR33A8MZF0 331 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 J3QW42 95 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 EGR1P18146 543 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 ZNF83P51522 516 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 ICAM4Q14773 271 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 ZNF726P1Q15940 193 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 FAM201AQ5SY85 155 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 SP5Q6BEB4 398 aaPredicted RBP15.98■□□□□ 0.15
VIM-203ENST00000469543 C22orf34Q6ZV56 151 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 LSM10Q969L4 123 aaKnown RBP15.98■□□□□ 0.15
VIM-203ENST00000469543 ZDHHC16Q969W1 377 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 SARAFQ96BY9 339 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 LIN7CQ9NUP9 197 aaKnown RBP15.98■□□□□ 0.15
VIM-203ENST00000469543 PKDREJQ9NTG1 2253 aa15.98■□□□□ 0.15
VIM-203ENST00000469543 UBE2KP61086 200 aa15.97■□□□□ 0.15
VIM-203ENST00000469543 OR4C12Q96R67 309 aa15.97■□□□□ 0.15
VIM-203ENST00000469543 PLSCR4Q9NRQ2 329 aa15.97■□□□□ 0.15
VIM-203ENST00000469543 GNG13Q9P2W3 67 aa15.97■□□□□ 0.15
VIM-203ENST00000469543 ZFP92A6NM28 416 aa15.97■□□□□ 0.15
VIM-203ENST00000469543 MMP9P14780 707 aa15.97■□□□□ 0.15
VIM-203ENST00000469543 ELLP55199 621 aaPredicted RBP15.97■□□□□ 0.15
VIM-203ENST00000469543 ZNF525Q8N782 197 aa15.97■□□□□ 0.15
VIM-203ENST00000469543 LRRC29Q8WV35 223 aa15.97■□□□□ 0.15
VIM-203ENST00000469543 CXXC4Q9H2H0 198 aa15.97■□□□□ 0.15
VIM-203ENST00000469543 ZNF665Q9H7R5 613 aa15.97■□□□□ 0.15
VIM-203ENST00000469543 H3BQ15 152 aa15.96■□□□□ 0.15
VIM-203ENST00000469543 GALR2O43603 387 aaPredicted RBP15.96■□□□□ 0.15
VIM-203ENST00000469543 CLDN1O95832 211 aa15.96■□□□□ 0.15
VIM-203ENST00000469543 IFNA5P01569 189 aa15.96■□□□□ 0.15
VIM-203ENST00000469543 SRP19P09132 144 aaKnown RBP15.96■□□□□ 0.15
VIM-203ENST00000469543 DEFA4P12838 97 aa15.96■□□□□ 0.15
VIM-203ENST00000469543 GCH1P30793 250 aa15.96■□□□□ 0.15
VIM-203ENST00000469543 ZNF645Q8N7E2 425 aa15.96■□□□□ 0.15
VIM-203ENST00000469543 FAM234AQ9H0X4 552 aa15.96■□□□□ 0.15
VIM-203ENST00000469543 TMEM210A6NLX4 147 aa15.96■□□□□ 0.15
VIM-203ENST00000469543 ZNRF1Q8ND25 227 aa15.96■□□□□ 0.15
VIM-203ENST00000469543 CLDND2Q8NHS1 167 aa15.96■□□□□ 0.15
VIM-203ENST00000469543 RBKSQ9H477 322 aa15.96■□□□□ 0.15
VIM-203ENST00000469543 PSG11Q9UQ72 335 aa15.96■□□□□ 0.15
VIM-203ENST00000469543 URGCP-MRPS24S4R325 110 aa15.96■□□□□ 0.15
VIM-203ENST00000469543 SCAF4O95104 1147 aaKnown RBP15.95■□□□□ 0.14
VIM-203ENST00000469543 CGAP01215 116 aa15.95■□□□□ 0.14
VIM-203ENST00000469543 ZNF343Q6P1L6 599 aa15.95■□□□□ 0.14
VIM-203ENST00000469543 BEND4Q6ZU67 534 aa15.95■□□□□ 0.14
VIM-203ENST00000469543 LILRB2Q8N423 598 aa15.95■□□□□ 0.14
VIM-203ENST00000469543 C15orf54Q8N8G6 183 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms