RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 PMCHL1Q16048 86 aa16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 ABHD3Q8WU67 409 aa16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 RND1Q92730 232 aa16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 ATG101Q9BSB4 218 aa16.45■□□□□ 0.22
CCDC88B-204ENST00000463837 BTCP35070 178 aa16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 LSM10Q969L4 123 aaKnown RBP16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 ZNF501Q96CX3 271 aaPredicted RBP16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 PCGF1Q9BSM1 259 aa16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 GGACTQ9BVM4 153 aa16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 BPIFA4PQ86YQ2 179 aa16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 OR1L1Q8NH94 360 aa16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 PARP14Q460N5 1801 aa16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 HBZP02008 142 aa16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 ACP1P24666 158 aa16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 CEACAM3P40198 252 aa16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 CXorf66Q5JRM2 361 aaPredicted RBP16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 ZNF506Q5JVG8 444 aa16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 RARRES2Q99969 163 aa16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 DCAF16Q9NXF7 216 aa16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 SPINK14Q6IE38 97 aa16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 REC114Q7Z4M0 266 aa16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 HSPB9Q9BQS6 159 aa16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 NEUROG3Q9Y4Z2 214 aa16.44■□□□□ 0.22
CCDC88B-204ENST00000463837 ZNF738Q8NE65 137 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 PSMG3Q9BT73 122 aaPredicted RBP16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 TINAGQ9UJW2 476 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 ZNF236Q9UL36 1845 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 TMEM229AB2RXF0 380 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 CORTO00230 105 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 ZNF645Q8N7E2 425 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 OR52M1Q8NGK5 317 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 OR1L8Q8NGR8 309 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 PXMP4Q9Y6I8 212 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 SEC16AO15027 2179 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 ZNFX1Q9P2E3 1918 aaKnown RBP16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 HLA-DQA1P01909 254 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 SFTPA2Q8IWL1 248 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 OR4X1Q8NH49 305 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 CCL17Q92583 94 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 A0A0J9YW62 118 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 IGHV5-10-1A0A0J9YXX1 117 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 LOC390937A0A1W2PQ73 354 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 GPR146Q96CH1 333 aa16.43■□□□□ 0.22
CCDC88B-204ENST00000463837 DNASE2O00115 360 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 FBXW9Q5XUX1 488 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 DOLPP1Q86YN1 238 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 OR52L2PQ8NGH6 319 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 NDUFB4O95168 129 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 CCL4P13236 92 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 HIST1H1BP16401 226 aaKnown RBP16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 BHLHA15Q7RTS1 189 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 TREM2Q9NZC2 230 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 KCNMB2Q9Y691 235 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 K7ERU9 68 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 PKIBQ9C010 78 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 RNF7Q9UBF6 113 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 TPRP12270 2363 aaKnown RBP16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 LNP1A1A4G5 178 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 RAB29O14966 203 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 SCTP09683 121 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 HOXB1P14653 301 aaPredicted RBP16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 C5orf17Q8NAS9 161 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 FLYWCH2Q96CP2 140 aaKnown RBP16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 SMIM8Q96KF7 97 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 SLC25A40Q8TBP6 338 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 ZNF488Q96MN9 340 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 RBKSQ9H477 322 aa16.42■□□□□ 0.22
CCDC88B-204ENST00000463837 TRIP12Q14669 1992 aaPredicted RBP16.41■□□□□ 0.22
CCDC88B-204ENST00000463837 TRGC1P0CF51 173 aa16.41■□□□□ 0.22
CCDC88B-204ENST00000463837 TNXAQ16473 311 aa16.41■□□□□ 0.22
CCDC88B-204ENST00000463837 WDR25Q64LD2 544 aaPredicted RBP16.41■□□□□ 0.22
CCDC88B-204ENST00000463837 DDA1Q9BW61 102 aa16.41■□□□□ 0.22
CCDC88B-204ENST00000463837 TUBA4BQ9H853 241 aa16.41■□□□□ 0.22
CCDC88B-204ENST00000463837 UQCR10Q9UDW1 63 aa16.41■□□□□ 0.22
CCDC88B-204ENST00000463837 SLC35B1P78383 322 aa16.41■□□□□ 0.22
CCDC88B-204ENST00000463837 TRBV9A0A0B4J1U6 114 aa16.41■□□□□ 0.22
CCDC88B-204ENST00000463837 ADAM11O75078 769 aa16.41■□□□□ 0.22
CCDC88B-204ENST00000463837 SH3BGRL3Q9H299 93 aa16.41■□□□□ 0.22
CCDC88B-204ENST00000463837 SAP30LQ9HAJ7 183 aa16.41■□□□□ 0.22
CCDC88B-204ENST00000463837 J3QR06 171 aa16.41■□□□□ 0.22
CCDC88B-204ENST00000463837 ZNF207O43670 478 aaKnown RBP16.41■□□□□ 0.22
CCDC88B-204ENST00000463837 MAGEA5P43359 124 aa16.41■□□□□ 0.22
CCDC88B-204ENST00000463837 C3AR1Q16581 482 aa16.4■□□□□ 0.22
CCDC88B-204ENST00000463837 OR51B2Q9Y5P1 312 aa16.4■□□□□ 0.22
CCDC88B-204ENST00000463837 IFITM10A6NMD0 228 aa16.4■□□□□ 0.22
CCDC88B-204ENST00000463837 TMEM250H0YL14 139 aa16.4■□□□□ 0.22
CCDC88B-204ENST00000463837 STAG3L2P0CL84 134 aa16.4■□□□□ 0.22
CCDC88B-204ENST00000463837 SSX8Q7RTT4 187 aa16.4■□□□□ 0.22
CCDC88B-204ENST00000463837 LOXL4Q96JB6 756 aa16.4■□□□□ 0.22
CCDC88B-204ENST00000463837 WNK3Q9BYP7 1800 aa16.4■□□□□ 0.22
CCDC88B-204ENST00000463837 KBTBD11O94819 623 aa16.4■□□□□ 0.22
CCDC88B-204ENST00000463837 ZNF137PP52743 207 aa16.4■□□□□ 0.22
CCDC88B-204ENST00000463837 EGR4Q05215 589 aa16.4■□□□□ 0.22
CCDC88B-204ENST00000463837 MESP2Q0VG99 397 aa16.4■□□□□ 0.22
CCDC88B-204ENST00000463837 OR4C12Q96R67 309 aa16.4■□□□□ 0.22
CCDC88B-204ENST00000463837 CCDC88CQ9P219 2028 aa16.4■□□□□ 0.22
CCDC88B-204ENST00000463837 ZNF638Q14966 1978 aaKnown RBP16.4■□□□□ 0.22
CCDC88B-204ENST00000463837 RNF222A6NCQ9 220 aa16.4■□□□□ 0.22
CCDC88B-204ENST00000463837 TMEM183AQ8IXX5 376 aa16.4■□□□□ 0.22
CCDC88B-204ENST00000463837 TMEM116Q8NCL8 245 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms