RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 HSPA12AO43301 675 aa16.7■□□□□ 0.26
HMGB3-205ENST00000455596 PRB2P02812 416 aaPredicted RBP16.7■□□□□ 0.26
HMGB3-205ENST00000455596 SCTP09683 121 aa16.7■□□□□ 0.26
HMGB3-205ENST00000455596 SLC6A1P30531 599 aa16.7■□□□□ 0.26
HMGB3-205ENST00000455596 ACTBP60709 375 aa16.7■□□□□ 0.26
HMGB3-205ENST00000455596 PLA2G7Q13093 441 aa16.7■□□□□ 0.26
HMGB3-205ENST00000455596 PLAC9Q5JTB6 97 aa16.7■□□□□ 0.26
HMGB3-205ENST00000455596 SPARTQ8N0X7 666 aa16.7■□□□□ 0.26
HMGB3-205ENST00000455596 EDARADDQ8WWZ3 215 aa16.7■□□□□ 0.26
HMGB3-205ENST00000455596 FCGR1BQ92637 280 aa16.7■□□□□ 0.26
HMGB3-205ENST00000455596 ZNF251Q9BRH9 671 aa16.7■□□□□ 0.26
HMGB3-205ENST00000455596 GHITMQ9H3K2 345 aa16.7■□□□□ 0.26
HMGB3-205ENST00000455596 ZNF107Q9UII5 783 aaPredicted RBP16.7■□□□□ 0.26
HMGB3-205ENST00000455596 SLC2A2P11168 524 aaPredicted RBP16.69■□□□□ 0.26
HMGB3-205ENST00000455596 PSMB9P28065 219 aa16.69■□□□□ 0.26
HMGB3-205ENST00000455596 CEACAM6P40199 344 aa16.69■□□□□ 0.26
HMGB3-205ENST00000455596 MRPS15P82914 257 aaKnown RBP16.69■□□□□ 0.26
HMGB3-205ENST00000455596 C22orf42Q6IC83 251 aa16.69■□□□□ 0.26
HMGB3-205ENST00000455596 KLHL30-AS1Q8NEE0 82 aa16.69■□□□□ 0.26
HMGB3-205ENST00000455596 RAB3CQ96E17 227 aa16.69■□□□□ 0.26
HMGB3-205ENST00000455596 RCC1LQ96I51 464 aaKnown RBP16.69■□□□□ 0.26
HMGB3-205ENST00000455596 NECAP2Q9NVZ3 263 aa16.69■□□□□ 0.26
HMGB3-205ENST00000455596 OR1A1Q9P1Q5 309 aa16.69■□□□□ 0.26
HMGB3-205ENST00000455596 NBR2O15453 112 aa16.68■□□□□ 0.26
HMGB3-205ENST00000455596 DUS4LO95620 317 aaKnown RBP16.68■□□□□ 0.26
HMGB3-205ENST00000455596 CD3GP09693 182 aa16.68■□□□□ 0.26
HMGB3-205ENST00000455596 VDAC1P21796 283 aa16.68■□□□□ 0.26
HMGB3-205ENST00000455596 GADD45AP24522 165 aa16.68■□□□□ 0.26
HMGB3-205ENST00000455596 RPL39P5Q59GN2 51 aa16.68■□□□□ 0.26
HMGB3-205ENST00000455596 CXorf66Q5JRM2 361 aaPredicted RBP16.68■□□□□ 0.26
HMGB3-205ENST00000455596 C18orf65Q6ZTR6 163 aa16.68■□□□□ 0.26
HMGB3-205ENST00000455596 C8orf86Q6ZUL3 223 aa16.68■□□□□ 0.26
HMGB3-205ENST00000455596 ABHD14BQ96IU4 210 aa16.68■□□□□ 0.26
HMGB3-205ENST00000455596 PARP12Q9H0J9 701 aaKnown RBP16.68■□□□□ 0.26
HMGB3-205ENST00000455596 TRDCB7Z8K6 153 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 IGF1P05019 195 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 RAB6AP20340 208 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 CNTFRP26992 372 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 THBS3P49746 956 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 FOXE3Q13461 319 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 MOGAT2Q3SYC2 334 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 FOXB2Q5VYV0 432 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 FAM131AQ6UXB0 335 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 ETV3LQ6ZN32 361 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 ZNF695Q8IW36 515 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 LINC00482Q8N8I6 264 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 OR10R2Q8NGX6 335 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 RITA1Q96K30 269 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 AGMATQ9BSE5 352 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 C11orf54Q9H0W9 315 aaPredicted RBP16.67■□□□□ 0.26
HMGB3-205ENST00000455596 KIAA1456Q9P272 454 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 ZNF580Q9UK33 172 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 KCNK7Q9Y2U2 307 aa16.67■□□□□ 0.26
HMGB3-205ENST00000455596 OR5H14A6NHG9 310 aa16.66■□□□□ 0.26
HMGB3-205ENST00000455596 ELANEP08246 267 aa16.66■□□□□ 0.26
HMGB3-205ENST00000455596 CT45A6P0DMU7 189 aa16.66■□□□□ 0.26
HMGB3-205ENST00000455596 CT45A5P0DMU8 189 aa16.66■□□□□ 0.26
HMGB3-205ENST00000455596 CT45A7P0DMV0 189 aa16.66■□□□□ 0.26
HMGB3-205ENST00000455596 FGF9P31371 208 aaPredicted RBP16.66■□□□□ 0.26
HMGB3-205ENST00000455596 NPBQ8NG41 125 aa16.66■□□□□ 0.26
HMGB3-205ENST00000455596 PTX4Q96A99 478 aa16.66■□□□□ 0.26
HMGB3-205ENST00000455596 TXNL4BQ9NX01 149 aaKnown RBP16.66■□□□□ 0.26
HMGB3-205ENST00000455596 STUB1Q9UNE7 303 aa16.66■□□□□ 0.26
HMGB3-205ENST00000455596 METTL21EPA6NDL7 271 aa16.65■□□□□ 0.26
HMGB3-205ENST00000455596 NDUFA3O95167 84 aa16.65■□□□□ 0.26
HMGB3-205ENST00000455596 HLA-DRB1P01911 266 aa16.65■□□□□ 0.26
HMGB3-205ENST00000455596 RPLP1P05386 114 aaKnown RBP16.65■□□□□ 0.26
HMGB3-205ENST00000455596 OR5H8P0DN80 308 aa16.65■□□□□ 0.26
HMGB3-205ENST00000455596 MC5RP33032 325 aa16.65■□□□□ 0.26
HMGB3-205ENST00000455596 MYCNOSP40205 109 aa16.65■□□□□ 0.26
HMGB3-205ENST00000455596 CFHR3Q02985 330 aa16.65■□□□□ 0.26
HMGB3-205ENST00000455596 C5orf64Q2M2E5 130 aa16.65■□□□□ 0.26
HMGB3-205ENST00000455596 GLDNQ6ZMI3 551 aaPredicted RBP16.65■□□□□ 0.26
HMGB3-205ENST00000455596 MRPL41Q8IXM3 137 aaKnown RBP16.65■□□□□ 0.26
HMGB3-205ENST00000455596 OR4A4PQ8NGN8 299 aa16.65■□□□□ 0.26
HMGB3-205ENST00000455596 CHCHD6Q9BRQ6 235 aa16.65■□□□□ 0.26
HMGB3-205ENST00000455596 AURKAIP1Q9NWT8 199 aaPredicted RBP16.65■□□□□ 0.26
HMGB3-205ENST00000455596 NOTCH3Q9UM47 2321 aa16.65■□□□□ 0.26
HMGB3-205ENST00000455596 A0A0B4J203 849 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 IGKV1-6A0A0C4DH72 117 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 RAB27BO00194 218 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 MFNGO00587 321 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 IGHG4P01861 327 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 FCGR3AP08637 254 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 GNB3P16520 340 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 SERPINB10P48595 397 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 KIR2DS1Q14954 304 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 LIN54Q6MZP7 749 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 NR2C2APQ86WQ0 139 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 RNF152Q8N8N0 203 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 MRAPQ8TCY5 172 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 KCTD7Q96MP8 289 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 OR51J1Q9H342 316 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 RDH8Q9NYR8 311 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 ZNF221Q9UK13 617 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 SSR3Q9UNL2 185 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 WASHC3Q9Y3C0 194 aa16.64■□□□□ 0.25
HMGB3-205ENST00000455596 A0A075B6Q4 140 aa16.63■□□□□ 0.25
HMGB3-205ENST00000455596 IGHV7-81A0A0B4J1V7 117 aa16.63■□□□□ 0.25
HMGB3-205ENST00000455596 SMIM30A4D0T7 59 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms