RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 LCN15Q6UWW0 184 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 MCEMP1Q8IX19 187 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 MDS2Q8NDY4 140 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 HIST1H2BHQ93079 126 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 P2RX4Q99571 388 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 HIST1H2BNQ99877 126 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 HIST1H2BMQ99879 126 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 RTL8AQ9BWD3 113 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 BOD1L1Q8NFC6 3051 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 ESPL1Q14674 2120 aa13.84□□□□□ -0.19
CLCNKA-203ENST00000439316 SIRPB1O00241 398 aa13.83□□□□□ -0.19
CLCNKA-203ENST00000439316 DLL1O00548 723 aa13.83□□□□□ -0.19
CLCNKA-203ENST00000439316 CYB5BO43169 146 aa13.83□□□□□ -0.19
CLCNKA-203ENST00000439316 SP1P08047 785 aa13.83□□□□□ -0.19
CLCNKA-203ENST00000439316 ARG2P78540 354 aa13.83□□□□□ -0.19
CLCNKA-203ENST00000439316 PLGLB1Q02325 96 aa13.83□□□□□ -0.19
CLCNKA-203ENST00000439316 FOXC1Q12948 553 aa13.83□□□□□ -0.19
CLCNKA-203ENST00000439316 TMEM41BQ5BJD5 291 aa13.83□□□□□ -0.19
CLCNKA-203ENST00000439316 FAM209BQ5JX69 171 aa13.83□□□□□ -0.19
CLCNKA-203ENST00000439316 MDP1Q86V88 176 aa13.83□□□□□ -0.19
CLCNKA-203ENST00000439316 Q8IYB0 196 aa13.83□□□□□ -0.19
CLCNKA-203ENST00000439316 BCL2L2Q92843 193 aaPredicted RBP13.83□□□□□ -0.19
CLCNKA-203ENST00000439316 WDR61Q9GZS3 305 aaKnown RBP13.83□□□□□ -0.19
CLCNKA-203ENST00000439316 KCNS2Q9ULS6 477 aa13.83□□□□□ -0.19
CLCNKA-203ENST00000439316 TRAV20A0A0B4J274 112 aa13.83□□□□□ -0.2
CLCNKA-203ENST00000439316 CYB5R3P00387 301 aaPredicted RBP13.83□□□□□ -0.2
CLCNKA-203ENST00000439316 DEFB109BQ30KR1 87 aa13.83□□□□□ -0.2
CLCNKA-203ENST00000439316 SPATA46Q5T0L3 261 aa13.83□□□□□ -0.2
CLCNKA-203ENST00000439316 LILRB2Q8N423 598 aa13.83□□□□□ -0.2
CLCNKA-203ENST00000439316 FDCSPQ8NFU4 85 aa13.83□□□□□ -0.2
CLCNKA-203ENST00000439316 NANOS1Q8WY41 292 aaKnown RBP13.83□□□□□ -0.2
CLCNKA-203ENST00000439316 MBNL3Q9NUK0 354 aaKnown RBP13.83□□□□□ -0.2
CLCNKA-203ENST00000439316 TRAPPC2LQ9UL33 140 aa13.83□□□□□ -0.2
CLCNKA-203ENST00000439316 ANKRD11Q6UB99 2663 aaPredicted RBP13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 ZNF891A8MT65 544 aaPredicted RBP13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 FAM90A26D6RGX4 464 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 FGF8P55075 233 aaPredicted RBP13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 PYY3Q5JQD4 70 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 SPNS3Q6ZMD2 512 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 C1orf87Q8N0U7 546 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 PRR18Q8N4B5 295 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 DRAM1Q8N682 238 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 PINX1Q96BK5 328 aaKnown RBP13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 SDF2L1Q9HCN8 221 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 GAR1Q9NY12 217 aaKnown RBP13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 KLF13Q9Y2Y9 288 aaPredicted RBP13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 WIPI2Q9Y4P8 454 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 DMRT1Q9Y5R6 373 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 SEC14L6B5MCN3 397 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 TRGC2P03986 189 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 CD46P15529 392 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 ZNF16P17020 682 aaPredicted RBP13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 S100A2P29034 98 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 PMS2P11Q13670 270 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 MRGPRGQ86SM5 289 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 SCCPDHQ8NBX0 429 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 FAM210BQ96KR6 192 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 OR4C12Q96R67 309 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 BCL2L14Q9BZR8 327 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 C12orf49Q9H741 205 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 VAX2Q9UIW0 290 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 POLDIP2Q9Y2S7 368 aa13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 RBM7Q9Y580 266 aaKnown RBP13.82□□□□□ -0.2
CLCNKA-203ENST00000439316 MAP1LC3B2A6NCE7 125 aa13.81□□□□□ -0.2
CLCNKA-203ENST00000439316 CLDN34H7C241 214 aa13.81□□□□□ -0.2
CLCNKA-203ENST00000439316 J3QW42 95 aa13.81□□□□□ -0.2
CLCNKA-203ENST00000439316 TGOLN2O43493 480 aa13.81□□□□□ -0.2
CLCNKA-203ENST00000439316 WDR1O75083 606 aa13.81□□□□□ -0.2
CLCNKA-203ENST00000439316 MEOX1P50221 254 aa13.81□□□□□ -0.2
CLCNKA-203ENST00000439316 TMEM14EPQ6UXP3 125 aa13.81□□□□□ -0.2
CLCNKA-203ENST00000439316 UBALD1Q8TB05 177 aa13.81□□□□□ -0.2
CLCNKA-203ENST00000439316 MAP1LC3BQ9GZQ8 125 aa13.81□□□□□ -0.2
CLCNKA-203ENST00000439316 TINAGQ9UJW2 476 aa13.81□□□□□ -0.2
CLCNKA-203ENST00000439316 TIMM9Q9Y5J7 89 aa13.81□□□□□ -0.2
CLCNKA-203ENST00000439316 MED12LQ86YW9 2145 aa13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 ELOA3CA0A087WX78 387 aaPredicted RBP13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 RNF212BA8MTL3 300 aa13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 KLRC4-KLRK1H3BQV0 150 aa13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 KLK10O43240 276 aa13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 IFNA1P01562 189 aa13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 PGA5P0DJD9 388 aa13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 SLC38A11Q08AI6 406 aa13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 ZNF146Q15072 292 aa13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 SPANXN5Q5MJ07 72 aa13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 FBXW9Q5XUX1 488 aa13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 TAF15Q92804 592 aaKnown RBP eCLIP13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 CEACAM6P40199 344 aa13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 NKX6-1P78426 367 aaPredicted RBP13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 TBC1D28Q2M2D7 210 aa13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 ZNF766Q5HY98 468 aa13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 SCNM1Q9BWG6 230 aa13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 ZMAT5Q9UDW3 170 aaKnown RBP13.8□□□□□ -0.2
CLCNKA-203ENST00000439316 UBE2L5PA0A1B0GUS4 154 aa13.79□□□□□ -0.2
CLCNKA-203ENST00000439316 CEBPZOSA8MTT3 80 aa13.79□□□□□ -0.2
CLCNKA-203ENST00000439316 SMPD2O60906 423 aa13.79□□□□□ -0.2
CLCNKA-203ENST00000439316 P0C879 139 aa13.79□□□□□ -0.2
CLCNKA-203ENST00000439316 TNFSF10P50591 281 aa13.79□□□□□ -0.2
CLCNKA-203ENST00000439316 ELLP55199 621 aaPredicted RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms