RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 PPIAL4EA0A075B759 164 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 PPIAL4DF5H284 164 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 APCSP02743 223 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 FAM157CP0CG43 387 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 PPIAL4FP0DN26 164 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 LY6EQ16553 131 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 LRP11Q86VZ4 500 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 ADAD2Q8NCV1 583 aaKnown RBP10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 PPIAL4AQ9Y536 164 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 TRAV39A0A0B4J263 110 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 WNT9BO14905 357 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 CEBPDP49716 269 aaPredicted RBP10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 CHAC2Q8WUX2 184 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 IGKV3D-15A0A087WSY6 115 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 IGKV3-15P01624 115 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 DTD1Q8TEA8 209 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 PILRBQ9UKJ0 227 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 ALPK3Q96L96 1907 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 CDRT15L2A8MXV6 281 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 CTSDP07339 412 aaPredicted RBP10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 SLC25A53Q5H9E4 307 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 SLIRPQ9GZT3 109 aaKnown RBP10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 NAT8Q9UHE5 227 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 A1L4Q6 167 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 LGALSLQ3ZCW2 172 aaPredicted RBP10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 SLC52A3Q9NQ40 469 aa10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 SF3B6Q9Y3B4 125 aaKnown RBP10.49□□□□□ -0.73
CCDC88A-207ENST00000436346 J3QT63 122 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 RELBQ01201 579 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 MYOZ3Q8TDC0 251 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 NKX2-6A6NCS4 301 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 SULT1A2P50226 295 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 ZNF658BQ4V348 819 aaPredicted RBP10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 STXBP6Q8NFX7 210 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 OR8G5Q8NG78 346 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 B2MP61769 119 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 SNX22Q96L94 193 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 KCNAB3O43448 404 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 TMEM255AQ5JRV8 349 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 PACRGQ96M98 296 aaPredicted RBP10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 PHLDA3Q9Y5J5 127 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 RBM11P57052 281 aaKnown RBP10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 ADIPOR1Q96A54 375 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 CCL28Q9NRJ3 127 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 IGKV3D-11A0A0A0MRZ8 115 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 BGLAPP02818 100 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 IGKV3-11P04433 115 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 P2RY1P47900 373 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 PAXXQ9BUH6 204 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 NEU3Q9UQ49 428 aa10.48□□□□□ -0.73
CCDC88A-207ENST00000436346 A0A1W2PPV9 198 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 EPOPA6NHQ4 379 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 CYB5R3P00387 301 aaPredicted RBP10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 FAM214BQ7L5A3 538 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 SLC35E3Q7Z769 313 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 ZNF519Q8TB69 540 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 UPK3AO75631 287 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 UCP2P55851 309 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 HSD17B13Q7Z5P4 300 aaPredicted RBP10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 LPAR5Q9H1C0 372 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 CEACAM18A8MTB9 384 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 MRPL54Q6P161 138 aaKnown RBP10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 MUC4Q99102 2169 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 ADAT3Q96EY9 351 aaPredicted RBP10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 TMEM56-RWDD3S4R434 201 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 IGHV3-72A0A0B4J1Y9 119 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 TCTAP57738 103 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 ANKRD55Q3KP44 614 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 CLLU1Q5K131 121 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 OR10G8Q8NGN5 311 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 DSPPQ9NZW4 1301 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 HBZP02008 142 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 SP9P0CG40 484 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 TMEM78Q5T7P6 136 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 ZNF488Q96MN9 340 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 WDFY2Q96P53 400 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 DUX5Q96PT3 197 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 GPX7Q96SL4 187 aaPredicted RBP10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 TUBA4BQ9H853 241 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 LEUTXA8MZ59 168 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 BTF3P20290 206 aaKnown RBP10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 SEZ6L2Q6UXD5 910 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 PTX4Q96A99 478 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 NAV3Q8IVL0 2385 aa10.47□□□□□ -0.73
CCDC88A-207ENST00000436346 INPP5JQ15735 1006 aaPredicted RBP10.46□□□□□ -0.73
CCDC88A-207ENST00000436346 CEACAM21Q3KPI0 293 aa10.46□□□□□ -0.73
CCDC88A-207ENST00000436346 HCP5Q6MZN7 132 aa10.46□□□□□ -0.73
CCDC88A-207ENST00000436346 PGLYRP3Q96LB9 341 aa10.46□□□□□ -0.73
CCDC88A-207ENST00000436346 METTL1Q9UBP6 276 aaKnown RBP10.46□□□□□ -0.73
CCDC88A-207ENST00000436346 AHRRA9YTQ3 701 aa10.46□□□□□ -0.73
CCDC88A-207ENST00000436346 ZNF735P0CB33 412 aa10.46□□□□□ -0.73
CCDC88A-207ENST00000436346 FAM53AQ6NSI3 398 aaPredicted RBP10.46□□□□□ -0.73
CCDC88A-207ENST00000436346 ZNF645Q8N7E2 425 aa10.46□□□□□ -0.73
CCDC88A-207ENST00000436346 OR2T10Q8NGZ9 312 aa10.46□□□□□ -0.73
CCDC88A-207ENST00000436346 KIAA0040Q15053 153 aa10.46□□□□□ -0.73
CCDC88A-207ENST00000436346 CLEC18BQ6UXF7 455 aa10.46□□□□□ -0.73
CCDC88A-207ENST00000436346 MOB4Q9Y3A3 225 aa10.46□□□□□ -0.73
CCDC88A-207ENST00000436346 A0A1W2PS18 150 aa10.46□□□□□ -0.73
CCDC88A-207ENST00000436346 REG1AP05451 166 aa10.46□□□□□ -0.73
CCDC88A-207ENST00000436346 CTSSP25774 331 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms