RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 IGHV3-11P01762 117 aa11.25□□□□□ -0.61
SDC1-204ENST00000429035 UBBP0CG47 229 aa11.25□□□□□ -0.61
SDC1-204ENST00000429035 SPNP16150 400 aa11.25□□□□□ -0.61
SDC1-204ENST00000429035 RUNX1Q01196 453 aa11.25□□□□□ -0.61
SDC1-204ENST00000429035 KIAA0141Q14154 515 aaPredicted RBP11.25□□□□□ -0.61
SDC1-204ENST00000429035 SRSF7Q16629 238 aaKnown RBP eCLIP11.25□□□□□ -0.61
SDC1-204ENST00000429035 ZNF429Q86V71 674 aa11.25□□□□□ -0.61
SDC1-204ENST00000429035 SVOPQ8N4V2 548 aa11.25□□□□□ -0.61
SDC1-204ENST00000429035 ARPC1AQ92747 370 aa11.25□□□□□ -0.61
SDC1-204ENST00000429035 ABHD14BQ96IU4 210 aa11.25□□□□□ -0.61
SDC1-204ENST00000429035 NICN1Q9BSH3 213 aa11.25□□□□□ -0.61
SDC1-204ENST00000429035 FAM103A1Q9BTL3 118 aaKnown RBP11.25□□□□□ -0.61
SDC1-204ENST00000429035 PIPOXQ9P0Z9 390 aa11.25□□□□□ -0.61
SDC1-204ENST00000429035 RRHO14718 337 aa11.24□□□□□ -0.61
SDC1-204ENST00000429035 RAB29O14966 203 aa11.24□□□□□ -0.61
SDC1-204ENST00000429035 LGALS1P09382 135 aaKnown RBP11.24□□□□□ -0.61
SDC1-204ENST00000429035 GNAO1P09471 354 aa11.24□□□□□ -0.61
SDC1-204ENST00000429035 TPPP2P59282 170 aa11.24□□□□□ -0.61
SDC1-204ENST00000429035 RPS27AP62979 156 aaKnown RBP11.24□□□□□ -0.61
SDC1-204ENST00000429035 PITPNAQ00169 270 aa11.24□□□□□ -0.61
SDC1-204ENST00000429035 RCN1Q15293 331 aa11.24□□□□□ -0.61
SDC1-204ENST00000429035 ACSM3Q53FZ2 586 aa11.24□□□□□ -0.61
SDC1-204ENST00000429035 FAM71F2Q6NXP2 309 aa11.24□□□□□ -0.61
SDC1-204ENST00000429035 UNQ5815/PRO19632Q6UWF5 114 aa11.24□□□□□ -0.61
SDC1-204ENST00000429035 LYPD6Q86Y78 171 aa11.24□□□□□ -0.61
SDC1-204ENST00000429035 NPBQ8NG41 125 aa11.24□□□□□ -0.61
SDC1-204ENST00000429035 OR6Q1Q8NGQ2 317 aa11.24□□□□□ -0.61
SDC1-204ENST00000429035 DLX4Q92988 240 aaPredicted RBP11.24□□□□□ -0.61
SDC1-204ENST00000429035 MS4A10Q96PG2 267 aa11.24□□□□□ -0.61
SDC1-204ENST00000429035 RCHY1Q96PM5 261 aa11.24□□□□□ -0.61
SDC1-204ENST00000429035 PARP12Q9H0J9 701 aaKnown RBP11.24□□□□□ -0.61
SDC1-204ENST00000429035 GHITMQ9H3K2 345 aa11.24□□□□□ -0.61
SDC1-204ENST00000429035 SLC23A1Q9UHI7 598 aa11.24□□□□□ -0.61
SDC1-204ENST00000429035 PSORS1C1Q9UIG5 152 aa11.24□□□□□ -0.61
SDC1-204ENST00000429035 OR5H14A6NHG9 310 aa11.23□□□□□ -0.61
SDC1-204ENST00000429035 C3orf84H3BNL1 204 aa11.23□□□□□ -0.61
SDC1-204ENST00000429035 HSPA12AO43301 675 aa11.23□□□□□ -0.61
SDC1-204ENST00000429035 SOX15O60248 233 aa11.23□□□□□ -0.61
SDC1-204ENST00000429035 GP9P14770 177 aa11.23□□□□□ -0.61
SDC1-204ENST00000429035 HTR2CP28335 458 aa11.23□□□□□ -0.61
SDC1-204ENST00000429035 CX3CL1P78423 397 aa11.23□□□□□ -0.61
SDC1-204ENST00000429035 MOB1BQ7L9L4 216 aa11.23□□□□□ -0.61
SDC1-204ENST00000429035 HAPLN4Q86UW8 402 aa11.23□□□□□ -0.61
SDC1-204ENST00000429035 PACRGLQ8N7B6 248 aa11.23□□□□□ -0.61
SDC1-204ENST00000429035 MINDY2Q8NBR6 621 aa11.23□□□□□ -0.61
SDC1-204ENST00000429035 HDHD3Q9BSH5 251 aaPredicted RBP11.23□□□□□ -0.61
SDC1-204ENST00000429035 RSRP1Q9BUV0 290 aa11.23□□□□□ -0.61
SDC1-204ENST00000429035 C8orf4Q9NR00 106 aa11.23□□□□□ -0.61
SDC1-204ENST00000429035 PLEKHJ1Q9NW61 149 aa11.23□□□□□ -0.61
SDC1-204ENST00000429035 OR1A1Q9P1Q5 309 aa11.23□□□□□ -0.61
SDC1-204ENST00000429035 WASHC3Q9Y3C0 194 aa11.23□□□□□ -0.61
SDC1-204ENST00000429035 LRRC42Q9Y546 428 aa11.23□□□□□ -0.61
SDC1-204ENST00000429035 HUWE1Q7Z6Z7 4374 aaKnown RBP11.23□□□□□ -0.61
SDC1-204ENST00000429035 H0YJW9 148 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 CA2P00918 260 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 CD1AP06126 327 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 CT45A6P0DMU7 189 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 CT45A5P0DMU8 189 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 CT45A7P0DMV0 189 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 HLA-DRB3P79483 266 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 TMEM267Q0VDI3 215 aaPredicted RBP11.22□□□□□ -0.61
SDC1-204ENST00000429035 UNC119Q13432 240 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 HSD17B12Q53GQ0 312 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 ACTBL2Q562R1 376 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 ZNF660Q6AZW8 331 aaPredicted RBP11.22□□□□□ -0.61
SDC1-204ENST00000429035 LRRTM1Q86UE6 522 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 PPP1R27Q86WC6 154 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 SBSPONQ8IVN8 264 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 TCTEX1D1Q8N7M0 179 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 NANOGP1Q8N7R0 232 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 GRPEL2Q8TAA5 225 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 KCNG3Q8TAE7 436 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 MUC7Q8TAX7 377 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 MND1Q9BWT6 205 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 TOLLIPQ9H0E2 274 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 METTL1Q9UBP6 276 aaKnown RBP11.22□□□□□ -0.61
SDC1-204ENST00000429035 RNF150Q9ULK6 438 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 GAB2Q9UQC2 676 aa11.22□□□□□ -0.61
SDC1-204ENST00000429035 A0A0A6YYD4 124 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 TRIM64CA6NLI5 447 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 FCN1O00602 326 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 OR8U9P0C7N5 309 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 FRMD6-AS1P0C7T7 363 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 CPEP16870 476 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 CD40LGP29965 261 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 P2RY14Q15391 338 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 LY6G6FQ5SQ64 297 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 LAIR2Q6ISS4 152 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 PYHIN1Q6K0P9 492 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 CEACAM19Q7Z692 300 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 DRAXINQ8NBI3 349 aaPredicted RBP11.21□□□□□ -0.61
SDC1-204ENST00000429035 EDARADDQ8WWZ3 215 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 OR4C12Q96R67 309 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 TM2D1Q9BX74 207 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 ZMAT4Q9H898 229 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 PLGRKTQ9HBL7 147 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 PALMDQ9NP74 551 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 ZNF355PQ9NSJ1 428 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 AK3Q9UIJ7 227 aa11.21□□□□□ -0.61
SDC1-204ENST00000429035 STAB2Q8WWQ8 2551 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms