RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 ZNF491Q8N8L2 437 aa13.29□□□□□ -0.28
TRIM39-209ENST00000428728 OR6M1Q8NGM8 313 aa13.29□□□□□ -0.28
TRIM39-209ENST00000428728 ABHD5Q8WTS1 349 aa13.29□□□□□ -0.28
TRIM39-209ENST00000428728 TMEM203Q969S6 136 aa13.29□□□□□ -0.28
TRIM39-209ENST00000428728 ABHD14BQ96IU4 210 aa13.29□□□□□ -0.28
TRIM39-209ENST00000428728 UBE2E2Q96LR5 201 aa13.29□□□□□ -0.28
TRIM39-209ENST00000428728 WWC2-AS2Q96NR7 200 aa13.29□□□□□ -0.28
TRIM39-209ENST00000428728 CHCHD6Q9BRQ6 235 aa13.29□□□□□ -0.28
TRIM39-209ENST00000428728 PLEKHJ1Q9NW61 149 aa13.29□□□□□ -0.28
TRIM39-209ENST00000428728 PIPOXQ9P0Z9 390 aa13.29□□□□□ -0.28
TRIM39-209ENST00000428728 SLC23A1Q9UHI7 598 aa13.29□□□□□ -0.28
TRIM39-209ENST00000428728 SCOCQ9UIL1 159 aa13.29□□□□□ -0.28
TRIM39-209ENST00000428728 VSIG4Q9Y279 399 aa13.29□□□□□ -0.28
TRIM39-209ENST00000428728 FBXO7Q9Y3I1 522 aa13.29□□□□□ -0.28
TRIM39-209ENST00000428728 A3GALT2U3KPV4 340 aa13.29□□□□□ -0.28
TRIM39-209ENST00000428728 A0A1W2PN81 502 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 NDUFA3O95167 84 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 LY86O95711 162 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 BPNT1O95861 308 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 IGLV1-40P01703 118 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 UCHL1P09936 223 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 OR8U8P0C7N1 319 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 CHRNA7P36544 502 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 QRFPP83859 136 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 ZNF616Q08AN1 781 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 RNLSQ5VYX0 342 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 LIN54Q6MZP7 749 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 FAM71F2Q6NXP2 309 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 ZNF880Q6PDB4 577 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 NPBQ8NG41 125 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 CASTOR1Q8WTX7 329 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 UFD1Q92890 307 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 FBXL15Q9H469 300 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 PLGRKTQ9HBL7 147 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 SCN3BQ9NY72 215 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 OR1A1Q9P1Q5 309 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 AK3Q9UIJ7 227 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 SORL1Q92673 2214 aa13.28□□□□□ -0.28
TRIM39-209ENST00000428728 H7C2Y5 167 aa13.27□□□□□ -0.29
TRIM39-209ENST00000428728 I3L521 148 aa13.27□□□□□ -0.29
TRIM39-209ENST00000428728 RAB29O14966 203 aa13.27□□□□□ -0.29
TRIM39-209ENST00000428728 SOCS1O15524 211 aa13.27□□□□□ -0.29
TRIM39-209ENST00000428728 HSMCR30P0CW71 290 aa13.27□□□□□ -0.29
TRIM39-209ENST00000428728 HLA-DRB3P79483 266 aa13.27□□□□□ -0.29
TRIM39-209ENST00000428728 KIAA0141Q14154 515 aaPredicted RBP13.27□□□□□ -0.29
TRIM39-209ENST00000428728 OR1N2Q8NGR9 330 aa13.27□□□□□ -0.29
TRIM39-209ENST00000428728 ALX4Q9H161 411 aaPredicted RBP13.27□□□□□ -0.29
TRIM39-209ENST00000428728 LPAR5Q9H1C0 372 aa13.27□□□□□ -0.29
TRIM39-209ENST00000428728 LSM4Q9Y4Z0 139 aaKnown RBP13.27□□□□□ -0.29
TRIM39-209ENST00000428728 DNAH9Q9NYC9 4486 aa13.27□□□□□ -0.29
TRIM39-209ENST00000428728 OR5H14A6NHG9 310 aa13.26□□□□□ -0.29
TRIM39-209ENST00000428728 H0YJW9 148 aa13.26□□□□□ -0.29
TRIM39-209ENST00000428728 RRHO14718 337 aa13.26□□□□□ -0.29
TRIM39-209ENST00000428728 HSPA12AO43301 675 aa13.26□□□□□ -0.29
TRIM39-209ENST00000428728 GSTP1P09211 210 aaKnown RBP13.26□□□□□ -0.29
TRIM39-209ENST00000428728 CT45A6P0DMU7 189 aa13.26□□□□□ -0.29
TRIM39-209ENST00000428728 CT45A5P0DMU8 189 aa13.26□□□□□ -0.29
TRIM39-209ENST00000428728 CT45A7P0DMV0 189 aa13.26□□□□□ -0.29
TRIM39-209ENST00000428728 RAB9AP51151 201 aa13.26□□□□□ -0.29
TRIM39-209ENST00000428728 RPS25P62851 125 aaKnown RBP13.26□□□□□ -0.29
TRIM39-209ENST00000428728 RUNX1Q01196 453 aa13.26□□□□□ -0.29
TRIM39-209ENST00000428728 GFI1Q99684 422 aa13.26□□□□□ -0.29
TRIM39-209ENST00000428728 URM1Q9BTM9 101 aaKnown RBP13.26□□□□□ -0.29
TRIM39-209ENST00000428728 ISYNA1Q9NPH2 558 aa13.26□□□□□ -0.29
TRIM39-209ENST00000428728 ZNF256Q9Y2P7 627 aaPredicted RBP13.26□□□□□ -0.29
TRIM39-209ENST00000428728 WASHC3Q9Y3C0 194 aa13.26□□□□□ -0.29
TRIM39-209ENST00000428728 AK6Q9Y3D8 172 aaKnown RBP13.26□□□□□ -0.29
TRIM39-209ENST00000428728 SLC17A2O00624 439 aa13.25□□□□□ -0.29
TRIM39-209ENST00000428728 SOX15O60248 233 aa13.25□□□□□ -0.29
TRIM39-209ENST00000428728 ARSBP15848 533 aa13.25□□□□□ -0.29
TRIM39-209ENST00000428728 AQP4P55087 323 aa13.25□□□□□ -0.29
TRIM39-209ENST00000428728 CX3CL1P78423 397 aa13.25□□□□□ -0.29
TRIM39-209ENST00000428728 IRF3Q14653 427 aa13.25□□□□□ -0.29
TRIM39-209ENST00000428728 C19orf54Q5BKX5 351 aa13.25□□□□□ -0.29
TRIM39-209ENST00000428728 TMEM91Q6ZNR0 172 aa13.25□□□□□ -0.29
TRIM39-209ENST00000428728 MINDY2Q8NBR6 621 aa13.25□□□□□ -0.29
TRIM39-209ENST00000428728 ASCL2Q99929 193 aa13.25□□□□□ -0.29
TRIM39-209ENST00000428728 NKX1-2Q9UD57 310 aaPredicted RBP13.25□□□□□ -0.29
TRIM39-209ENST00000428728 FOXA2Q9Y261 457 aaPredicted RBP13.25□□□□□ -0.29
TRIM39-209ENST00000428728 U3KQK5 164 aa13.25□□□□□ -0.29
TRIM39-209ENST00000428728 TRBV6-6A0A0A6YYG2 114 aa13.24□□□□□ -0.29
TRIM39-209ENST00000428728 CEACAM6P40199 344 aa13.24□□□□□ -0.29
TRIM39-209ENST00000428728 VEGFCP49767 419 aa13.24□□□□□ -0.29
TRIM39-209ENST00000428728 SLURP1P55000 103 aa13.24□□□□□ -0.29
TRIM39-209ENST00000428728 CLDN12P56749 244 aa13.24□□□□□ -0.29
TRIM39-209ENST00000428728 RAB11BQ15907 218 aa13.24□□□□□ -0.29
TRIM39-209ENST00000428728 DRAXINQ8NBI3 349 aaPredicted RBP13.24□□□□□ -0.29
TRIM39-209ENST00000428728 EDARADDQ8WWZ3 215 aa13.24□□□□□ -0.29
TRIM39-209ENST00000428728 DCUN1D4Q92564 292 aa13.24□□□□□ -0.29
TRIM39-209ENST00000428728 CLCC1Q96S66 551 aa13.24□□□□□ -0.29
TRIM39-209ENST00000428728 FAM103A1Q9BTL3 118 aaKnown RBP13.24□□□□□ -0.29
TRIM39-209ENST00000428728 C11orf54Q9H0W9 315 aaPredicted RBP13.24□□□□□ -0.29
TRIM39-209ENST00000428728 RIMS4Q9H426 269 aaPredicted RBP13.24□□□□□ -0.29
TRIM39-209ENST00000428728 C12orf4Q9NQ89 552 aa13.24□□□□□ -0.29
TRIM39-209ENST00000428728 RNF150Q9ULK6 438 aa13.24□□□□□ -0.29
TRIM39-209ENST00000428728 GAB2Q9UQC2 676 aa13.24□□□□□ -0.29
TRIM39-209ENST00000428728 FCN1O00602 326 aa13.23□□□□□ -0.29
TRIM39-209ENST00000428728 OVOL1O14753 267 aa13.23□□□□□ -0.29
TRIM39-209ENST00000428728 SCTP09683 121 aa13.23□□□□□ -0.29
TRIM39-209ENST00000428728 NHLRC4P0CG21 123 aaPredicted RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms