RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PAAF1Q9BRP4 392 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 TRAV9-2A0A087WT02 112 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 APCDD1LQ8NCL9 501 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 GPR35Q9HC97 309 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 KCNE3Q9Y6H6 103 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 GVINP1Q7Z2Y8 2422 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 GREB1Q4ZG55 1949 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 A0A1W2PRS3 328 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 SHISA6Q6ZSJ9 500 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 PAQR9Q6ZVX9 377 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 WDYHV1Q96HA8 205 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 GLRX2Q9NS18 164 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 A0A1B0GTH9 108 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-206ENST00000409809 ZNF324O75467 553 aaPredicted RBP11.3□□□□□ -0.6
COL6A3-206ENST00000409809 SMAD2Q15796 467 aaKnown RBP11.3□□□□□ -0.6
COL6A3-206ENST00000409809 OVOL2Q9BRP0 275 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 TMEM140Q9NV12 185 aa11.3□□□□□ -0.6
COL6A3-206ENST00000409809 IFITM3Q01628 133 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 OR10J3Q5JRS4 329 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 OTPQ5XKR4 325 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 IDSB3KWA1 339 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 NCKAP5O14513 1909 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 GABRG2P18507 467 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 PTPRDP23468 1912 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 CTSSP25774 331 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 RND3P61587 244 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 OR4X1Q8NH49 305 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 TIMP4Q99727 224 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 PHF3Q92576 2039 aaKnown RBP11.29□□□□□ -0.6
COL6A3-206ENST00000409809 ISG15P05161 165 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 SLC6A13Q9NSD5 602 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 MED29Q9NX70 200 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 SYNGR1O43759 233 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 GNG7O60262 68 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 HYPMO75409 117 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 MESTQ5EB52 335 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 MRGPRDQ8TDS7 321 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 SF3B5Q9BWJ5 86 aaKnown RBP11.29□□□□□ -0.6
COL6A3-206ENST00000409809 FFAR1O14842 300 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 ESDP10768 282 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 GPR183P32249 361 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 MRAP2Q96G30 205 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 IFI6P09912 130 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 PRDX2P32119 198 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 LYG1Q8N1E2 194 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 TAF15Q92804 592 aaKnown RBP eCLIP11.29□□□□□ -0.6
COL6A3-206ENST00000409809 CNRIP1Q96F85 164 aaPredicted RBP11.29□□□□□ -0.6
COL6A3-206ENST00000409809 TMEM106BQ9NUM4 274 aa11.29□□□□□ -0.6
COL6A3-206ENST00000409809 P2RY4P51582 365 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 PXMP4Q9Y6I8 212 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 LILRA5A6NI73 299 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 HSD52Q0P140 79 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 GVQW1Q8N7I0 195 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 AQP3Q92482 292 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 PLPP3O14495 311 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 ASB10Q8WXI3 467 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 RGP1Q92546 391 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-206ENST00000409809 TNFRSF12AQ9NP84 129 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 TRBV23-1A0A0A0MS06 115 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 PGPEP1LA6NFU8 196 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 ADRA2AP08913 450 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 MAJINQ3KP22 176 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 FOXB1Q99853 325 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 ATRXP46100 2492 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 DLEU1O43261 78 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 ADAD2Q8NCV1 583 aaKnown RBP11.28□□□□□ -0.6
COL6A3-206ENST00000409809 OR4D5Q8NGN0 318 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 ACRP10323 421 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 DEFB133Q30KQ1 61 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 FAM53AQ6NSI3 398 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-206ENST00000409809 LYZL2Q7Z4W2 148 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 MRGPRFQ96AM1 343 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 A0A1W2PQD3 144 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 ETHE1O95571 254 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 RNF224P0DH78 156 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 TMEM177Q53S58 311 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 ZNF324BQ6AW86 544 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-206ENST00000409809 C10orf111Q8N326 155 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 OR4C3Q8NH37 302 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 TMEM170AQ8WVE7 144 aa11.28□□□□□ -0.6
COL6A3-206ENST00000409809 MT-CO3P00414 261 aa11.27□□□□□ -0.6
COL6A3-206ENST00000409809 BHLHA15Q7RTS1 189 aaPredicted RBP11.27□□□□□ -0.6
COL6A3-206ENST00000409809 ZADH2Q8N4Q0 377 aa11.27□□□□□ -0.6
COL6A3-206ENST00000409809 TRBV5-3A0A0A0MS03 114 aa11.27□□□□□ -0.6
COL6A3-206ENST00000409809 TRAV8-2A0A0B4J237 113 aa11.27□□□□□ -0.6
COL6A3-206ENST00000409809 VSIG10L2P0DP72 767 aa11.27□□□□□ -0.6
COL6A3-206ENST00000409809 GAGE1Q13065 139 aa11.27□□□□□ -0.61
COL6A3-206ENST00000409809 RASL11AQ6T310 242 aa11.27□□□□□ -0.61
COL6A3-206ENST00000409809 SERGEFQ9UGK8 458 aa11.27□□□□□ -0.61
COL6A3-206ENST00000409809 KLK2P20151 261 aa11.27□□□□□ -0.61
COL6A3-206ENST00000409809 SMPXQ9UHP9 88 aa11.27□□□□□ -0.61
COL6A3-206ENST00000409809 SBF2Q86WG5 1849 aa11.27□□□□□ -0.61
COL6A3-206ENST00000409809 GAGE13Q4V321 117 aa11.27□□□□□ -0.61
COL6A3-206ENST00000409809 SSMEM1Q8WWF3 244 aa11.27□□□□□ -0.61
COL6A3-206ENST00000409809 CHCHD1Q96BP2 118 aaKnown RBP11.27□□□□□ -0.61
COL6A3-206ENST00000409809 FCGR3AP08637 254 aa11.27□□□□□ -0.61
COL6A3-206ENST00000409809 PGLYRP3Q96LB9 341 aa11.27□□□□□ -0.61
COL6A3-206ENST00000409809 THAP10Q9P2Z0 257 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-206ENST00000409809 TMIGD3P0DMS9 266 aaPredicted RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms