RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 B9D1Q9UPM9 204 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 SCN1AP35498 2009 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 ZSWIM8A7E2V4 1837 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 A0A0G2JNJ9 132 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 EIF3GO75821 320 aaKnown RBP eCLIP6.32□□□□□ -1.4
SCN9A-202ENST00000409435 TIAL1Q01085 375 aaKnown RBP eCLIP6.32□□□□□ -1.44e-15■■■□□ 14.9
SCN9A-202ENST00000409435 ZNF816Q0VGE8 651 aaPredicted RBP6.32□□□□□ -1.4
SCN9A-202ENST00000409435 BIVMQ86UB2 503 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 TAAR6Q96RI8 345 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 NIPSNAP1Q9BPW8 284 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 Q9UFV3 132 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 FAM221AA4D161 298 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 F5H697 171 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 HRKO00198 91 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 GASTP01350 101 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 RBP4P02753 201 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 TNXAQ16473 311 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 IMMP1LQ96LU5 166 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 SEBOXQ9HB31 216 aaPredicted RBP6.32□□□□□ -1.4
SCN9A-202ENST00000409435 ZNF275Q9NSD4 429 aaPredicted RBP6.32□□□□□ -1.4
SCN9A-202ENST00000409435 RIF1Q5UIP0 2472 aaKnown RBP6.32□□□□□ -1.4
SCN9A-202ENST00000409435 HMX2A2RU54 273 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 GALP22466 123 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 RRN3P1Q2M238 152 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 MRPL52Q86TS9 123 aaKnown RBP6.32□□□□□ -1.4
SCN9A-202ENST00000409435 ERGIC1Q969X5 290 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 ACY3Q96HD9 319 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 CNTD2Q9H8S5 307 aa6.32□□□□□ -1.4
SCN9A-202ENST00000409435 PTP4A3O75365 173 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 GAPDHP04406 335 aaKnown RBP6.31□□□□□ -1.4
SCN9A-202ENST00000409435 ATF1P18846 271 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 ID1P41134 155 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 OR10S1Q8NGN2 331 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 OR1P1Q8NH06 330 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 FAM110DQ8TAY7 271 aaPredicted RBP6.31□□□□□ -1.4
SCN9A-202ENST00000409435 FLRT3Q9NZU0 649 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 RABAC1Q9UI14 185 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 WIPI2Q9Y4P8 454 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 LOC107986453A0A1B0GWG9 222 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 MT-ND6P03923 174 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 TYMSP04818 313 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 KHDC3LQ587J8 217 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 OVCH2Q7RTZ1 564 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 WDFY1Q8IWB7 410 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 DOK1Q99704 481 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 TMED3Q9Y3Q3 217 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 CABIN1Q9Y6J0 2220 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 SNURFLB1AK76 121 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 PGA4P0DJD7 388 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 PGA5P0DJD9 388 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 HIST1H1DP16402 221 aaKnown RBP6.31□□□□□ -1.4
SCN9A-202ENST00000409435 GLRXP35754 106 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 TMEM249Q2WGJ8 235 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 FAM106AQ4KMX7 169 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 TMEM128Q5BJH2 165 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 ZFAND6Q6FIF0 208 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 CBLN3Q6UW01 205 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 WFDC3Q8IUB2 231 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 OSR2Q8N2R0 312 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 TMPRSS13Q9BYE2 586 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 TMEM106BQ9NUM4 274 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 R4GMQ9 66 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 ZNF324O75467 553 aaPredicted RBP6.31□□□□□ -1.4
SCN9A-202ENST00000409435 DNAL4O96015 105 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 CDX1P47902 265 aaPredicted RBP6.31□□□□□ -1.4
SCN9A-202ENST00000409435 ANKRD55Q3KP44 614 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 FOXB2Q5VYV0 432 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 C11orf44Q8N8P7 122 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 JKAMPQ9P055 326 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 DKK4Q9UBT3 224 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 AGAP20933 346 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 RIPPLY3P57055 190 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 TWIST1Q15672 202 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 TMEM229BQ8NBD8 167 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 SMIM4Q8WVI0 70 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 P2RX4Q99571 388 aa6.31□□□□□ -1.4
SCN9A-202ENST00000409435 TDRD6O60522 2096 aaKnown RBP6.3□□□□□ -1.4
SCN9A-202ENST00000409435 ZNF729A6NN14 1252 aaPredicted RBP6.3□□□□□ -1.4
SCN9A-202ENST00000409435 H3BMH7 237 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 CDIPTO14735 213 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 UBE2L3P68036 154 aaKnown RBP6.3□□□□□ -1.4
SCN9A-202ENST00000409435 SURF2Q15527 256 aaPredicted RBP6.3□□□□□ -1.4
SCN9A-202ENST00000409435 ACSM6Q6P461 480 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 IGF2-ASQ6U949 168 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 IGFL3Q6UXB1 125 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 OR8G5Q8NG78 346 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 OR52B4Q8NGK2 314 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 OR1L4Q8NGR5 311 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 SMDT1Q9H4I9 107 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 SLC25A19Q9HC21 320 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 IL36GQ9NZH8 169 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 ST3GAL6Q9Y274 331 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 DEFB108AA8MXU0 73 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 RER1O15258 196 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 MBPP02686 304 aaPredicted RBP6.3□□□□□ -1.4
SCN9A-202ENST00000409435 CD3DP04234 171 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 RFPL3SP0C7P2 107 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 TMEM95Q3KNT9 176 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 C5orf17Q8NAS9 161 aa6.3□□□□□ -1.4
SCN9A-202ENST00000409435 MARCH1Q8TCQ1 289 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms