RNA–Protein interactions for RNA: ENST00000398510.7

CHD9-202, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best) BASIC

Gene CHD9, Length 11,337 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-202ENST00000398510 B4GALT3O60512 393 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 CTSVO60911 334 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 DUSP14O95147 198 aaKnown RBP2.38□□□□□ -2.03
CHD9-202ENST00000398510 PDGFBP01127 241 aaPredicted RBP2.38□□□□□ -2.03
CHD9-202ENST00000398510 GASTP01350 101 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 PRDX2P32119 198 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 EVX1P49640 407 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 ZNF117Q03924 483 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 SMN1Q16637 294 aaKnown RBP2.38□□□□□ -2.03
CHD9-202ENST00000398510 EXTL1Q92935 676 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 HIST1H2BAQ96A08 127 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 ADAT3Q96EY9 351 aaPredicted RBP2.38□□□□□ -2.03
CHD9-202ENST00000398510 USMG5Q96IX5 58 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 SIGLEC12Q96PQ1 595 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 FGFBP2Q9BYJ0 223 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 C11orf68Q9H3H3 251 aaKnown RBP2.38□□□□□ -2.03
CHD9-202ENST00000398510 WSB1Q9Y6I7 421 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 MALRD1Q5VYJ5 2156 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 USF3Q68DE3 2245 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 ZNF729A6NN14 1252 aaPredicted RBP2.38□□□□□ -2.03
CHD9-202ENST00000398510 CYR61O00622 381 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 GYPBP06028 91 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 ALOX5APP20292 161 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 DRD3P35462 400 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 PTTG1IPP53801 180 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 CBLN2Q8IUK8 224 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 OR1B1Q8NGR6 318 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 OR2G2Q8NGZ5 317 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 LSM10Q969L4 123 aaKnown RBP2.38□□□□□ -2.03
CHD9-202ENST00000398510 ZNF257Q9Y2Q1 563 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 LINC00862A6NCI5 91 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 LIPT2A6NK58 231 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 STATHP02808 62 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 LIMS1P48059 325 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 MFAP4P55083 255 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 CEBPEQ15744 281 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 PRICKLE4Q2TBC4 344 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 ZNF648Q5T619 568 aaPredicted RBP2.38□□□□□ -2.03
CHD9-202ENST00000398510 SPSB3Q6PJ21 355 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 LCN15Q6UWW0 184 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 GLDNQ6ZMI3 551 aaPredicted RBP2.38□□□□□ -2.03
CHD9-202ENST00000398510 SSX9Q7RTT3 188 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 SSX7Q7RTT5 188 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 FAM169BQ8N8A8 192 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 OR13A1Q8NGR1 328 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 MARC2Q969Z3 335 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 C14orf79Q96F83 325 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 MRPL13Q9BYD1 178 aaKnown RBP2.38□□□□□ -2.03
CHD9-202ENST00000398510 SLC35B3Q9H1N7 401 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 PUS1Q9Y606 427 aaKnown RBP eCLIP2.38□□□□□ -2.03
CHD9-202ENST00000398510 LRRK2Q5S007 2527 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 LOC102724200A0A096LPH7 203 aaPredicted RBP2.38□□□□□ -2.03
CHD9-202ENST00000398510 TCRBV7S2A1N4TA0A589 114 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 POM121BA6NF01 834 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 PLPP3O14495 311 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 BCL2L11O43521 198 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 CEACAM5P06731 702 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 CD37P11049 281 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 SCGB1A1P11684 91 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 GLRXP35754 106 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 S100A7L2Q5SY68 101 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 NSUN5P2Q63ZY6 315 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 CFAP77Q6ZQR2 320 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 PAQR4Q8N4S7 273 aaPredicted RBP2.38□□□□□ -2.03
CHD9-202ENST00000398510 RNASEH2CQ8TDP1 164 aaKnown RBP2.38□□□□□ -2.03
CHD9-202ENST00000398510 MS4A3Q96HJ5 214 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 DUX5Q96PT3 197 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 TMEM191AQ9H0A3 160 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 CHODLQ9H9P2 273 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 CISD1Q9NZ45 108 aaKnown RBP2.38□□□□□ -2.03
CHD9-202ENST00000398510 NTNG1Q9Y2I2 539 aa2.38□□□□□ -2.03
CHD9-202ENST00000398510 SDK2Q58EX2 2172 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 C3orf85A0A1B0GTC6 90 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 PCP4L1A6NKN8 68 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 NME4O00746 187 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 CTDSP2O14595 271 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 FRS3O43559 492 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 APOMO95445 188 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 F12P00748 615 aaPredicted RBP2.37□□□□□ -2.03
CHD9-202ENST00000398510 NPPCP23582 126 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 SOX8P57073 446 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 SLAQ13239 276 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 UNC119Q13432 240 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 KCNAB1Q14722 419 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 SPANXN1Q5VSR9 72 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 B3GNT8Q7Z7M8 397 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 RBM45Q8IUH3 476 aaKnown RBP2.37□□□□□ -2.03
CHD9-202ENST00000398510 VSTM2LQ96N03 204 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 AP4M1O00189 453 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 CTDSPLO15194 276 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 CHST1O43916 411 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 PITX3O75364 302 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 MOSPD3O75425 235 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 RNF151Q2KHN1 245 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 MINOS1Q5TGZ0 78 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 LCN10Q6JVE6 187 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 ZDHHC24Q6UX98 284 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 C12orf54Q6X4T0 127 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 ZNF841Q6ZN19 808 aa2.37□□□□□ -2.03
CHD9-202ENST00000398510 OR5M9Q8NGP3 310 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms