RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 COL13A1Q5TAT6 717 aaPredicted RBP6.24□□□□□ -1.41
UPF2-203ENST00000397053 ZNF826PQ6ZT77 177 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 ZNF383Q8NA42 475 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 ABHD14BQ96IU4 210 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 KIR2DL4Q99706 377 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 LRP6O75581 1613 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 IGHV3OR16-13A0A075B7E8 117 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.24□□□□□ -1.41
UPF2-203ENST00000397053 IGHV3-74A0A0B4J1X5 117 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 CTXND1A0A1B0GTU2 59 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 HRKO00198 91 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 PDE6DO43924 150 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 PSG2P11465 335 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 GALP22466 123 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 CSRP2Q16527 193 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 CTF1Q16619 201 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 ZNF880Q6PDB4 577 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 C8orf46Q8TAG6 207 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 ANAPC16Q96DE5 110 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 TMEM101Q96IK0 257 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 METRNQ9UJH8 293 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 ZFP30Q9Y2G7 519 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 SONP18583 2426 aaKnown RBP6.24□□□□□ -1.41
UPF2-203ENST00000397053 A0A0G2JLM5 398 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 RPLP1P05386 114 aaKnown RBP6.24□□□□□ -1.41
UPF2-203ENST00000397053 NAT2P11245 290 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 FOXL2P58012 376 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 PCOLCEQ15113 449 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 C9orf40Q8IXQ3 194 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 TMEM183AQ8IXX5 376 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 LINC00469Q8N7U9 141 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 FAM216AQ8WUB2 273 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 RNF133Q8WVZ7 376 aa6.24□□□□□ -1.41
UPF2-203ENST00000397053 C4BP0C0L5 1744 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 TRGV2A0A075B6R0 118 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 NKX2-6A6NCS4 301 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 PGPA6NDG6 321 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 MMP16P51512 607 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 CD81P60033 236 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 WDFY1Q8IWB7 410 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 GPR82Q96P67 336 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 RAB33BQ9H082 229 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 RALYQ9UKM9 306 aaKnown RBP6.23□□□□□ -1.41
UPF2-203ENST00000397053 ODAMA1E959 279 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 NPIPB11E5RHQ5 1161 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 PEX11BO96011 259 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 APCSP02743 223 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 IGHV4-34P06331 123 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 CELA2AP08217 269 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 TRGC1P0CF51 173 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 ANOS1P23352 680 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 CDX1P47902 265 aaPredicted RBP6.23□□□□□ -1.41
UPF2-203ENST00000397053 TCTAP57738 103 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 DEFB121Q5J5C9 76 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 UBE2DNLQ8IWF7 75 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 SSC4DQ8WTU2 575 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 ATG101Q9BSB4 218 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 SLC6A13Q9NSD5 602 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 FLRT3Q9NZU0 649 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 CBY1Q9Y3M2 126 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 MYH13Q9UKX3 1938 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 MYH14Q7Z406 1995 aaKnown RBP6.23□□□□□ -1.41
UPF2-203ENST00000397053 A0A1W2PQF6 199 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 AP4M1O00189 453 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 GDF9O60383 454 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 CYB5R3P00387 301 aaPredicted RBP6.23□□□□□ -1.41
UPF2-203ENST00000397053 CFDP00746 253 aaPredicted RBP6.23□□□□□ -1.41
UPF2-203ENST00000397053 CEACAM1P13688 526 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 LGALS3P17931 250 aaKnown RBP6.23□□□□□ -1.41
UPF2-203ENST00000397053 TNFSF10P50591 281 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 PSG4Q00888 419 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 FXYD3Q14802 87 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 CLLU1Q5K131 121 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 ATP1A1-AS1Q5TC04 95 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 OR5AU1Q8NGC0 362 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 MRPL24Q96A35 216 aaKnown RBP6.23□□□□□ -1.41
UPF2-203ENST00000397053 AURKAIP1Q9NWT8 199 aaPredicted RBP6.23□□□□□ -1.41
UPF2-203ENST00000397053 NPFFO15130 113 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 INSL4Q14641 139 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 CEACAM21Q3KPI0 293 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 SAMD13Q5VXD3 122 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 PET117Q6UWS5 81 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 DPPA3Q6W0C5 159 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 PRELID3AQ96N28 172 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 NPFFR1Q9GZQ6 430 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 ZNF430Q9H8G1 570 aaPredicted RBP6.23□□□□□ -1.41
UPF2-203ENST00000397053 CALYQ9NYX4 217 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 PRR13Q9NZ81 148 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 ZNF142P52746 1687 aaPredicted RBP6.23□□□□□ -1.41
UPF2-203ENST00000397053 PLCE1Q9P212 2302 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 EVPLQ92817 2033 aa6.23□□□□□ -1.41
UPF2-203ENST00000397053 KBTBD11O94819 623 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 DLX6P56179 175 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 RAB24Q969Q5 203 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 C12orf57Q99622 126 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 KLK15Q9H2R5 256 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 PRDM6Q9NQX0 595 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 CYB5R1Q9UHQ9 305 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 CDC42EP3Q9UKI2 254 aa6.22□□□□□ -1.41
UPF2-203ENST00000397053 FAM74A7A6NL05 159 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms