RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 IGHG4P01861 327 aa17.01■□□□□ 0.31
CCDC28B-201ENST00000373602 SLC2A2P11168 524 aaPredicted RBP17.01■□□□□ 0.31
CCDC28B-201ENST00000373602 CNTFRP26992 372 aa17.01■□□□□ 0.31
CCDC28B-201ENST00000373602 VEGFCP49767 419 aa17.01■□□□□ 0.31
CCDC28B-201ENST00000373602 HLA-DRB3P79483 266 aa17.01■□□□□ 0.31
CCDC28B-201ENST00000373602 SSX1Q16384 188 aa17.01■□□□□ 0.31
CCDC28B-201ENST00000373602 C2orf76Q3KRA6 126 aa17.01■□□□□ 0.31
CCDC28B-201ENST00000373602 LCNL1Q6ZST4 164 aa17.01■□□□□ 0.31
CCDC28B-201ENST00000373602 ARHGAP5-AS1Q96IT6 56 aa17.01■□□□□ 0.31
CCDC28B-201ENST00000373602 GPR61Q9BZJ8 451 aa17.01■□□□□ 0.31
CCDC28B-201ENST00000373602 RAB26Q9ULW5 256 aa17.01■□□□□ 0.31
CCDC28B-201ENST00000373602 RAB29O14966 203 aa17■□□□□ 0.31
CCDC28B-201ENST00000373602 NBR2O15453 112 aa17■□□□□ 0.31
CCDC28B-201ENST00000373602 OR5H8P0DN80 308 aa17■□□□□ 0.31
CCDC28B-201ENST00000373602 CDX1P47902 265 aaPredicted RBP17■□□□□ 0.31
CCDC28B-201ENST00000373602 KRTAP10-11P60412 298 aa17■□□□□ 0.31
CCDC28B-201ENST00000373602 EGFEM1PQ0D2K5 195 aa17■□□□□ 0.31
CCDC28B-201ENST00000373602 NPBQ8NG41 125 aa17■□□□□ 0.31
CCDC28B-201ENST00000373602 KCTD7Q96MP8 289 aa17■□□□□ 0.31
CCDC28B-201ENST00000373602 CHCHD6Q9BRQ6 235 aa17■□□□□ 0.31
CCDC28B-201ENST00000373602 MCRIP2Q9BUT9 160 aaKnown RBP17■□□□□ 0.31
CCDC28B-201ENST00000373602 PECRQ9BY49 303 aa17■□□□□ 0.31
CCDC28B-201ENST00000373602 PARP12Q9H0J9 701 aaKnown RBP17■□□□□ 0.31
CCDC28B-201ENST00000373602 Q9N2K0 584 aa17■□□□□ 0.31
CCDC28B-201ENST00000373602 C12orf4Q9NQ89 552 aa17■□□□□ 0.31
CCDC28B-201ENST00000373602 HLA-DRB1P01911 266 aa16.99■□□□□ 0.31
CCDC28B-201ENST00000373602 CT45A6P0DMU7 189 aa16.99■□□□□ 0.31
CCDC28B-201ENST00000373602 CT45A5P0DMU8 189 aa16.99■□□□□ 0.31
CCDC28B-201ENST00000373602 CT45A7P0DMV0 189 aa16.99■□□□□ 0.31
CCDC28B-201ENST00000373602 PLAC9Q5JTB6 97 aa16.99■□□□□ 0.31
CCDC28B-201ENST00000373602 OR56B1Q8NGI3 324 aa16.99■□□□□ 0.31
CCDC28B-201ENST00000373602 RAX2Q96IS3 184 aa16.99■□□□□ 0.31
CCDC28B-201ENST00000373602 CMSS1Q9BQ75 279 aaKnown RBP16.99■□□□□ 0.31
CCDC28B-201ENST00000373602 AGMATQ9BSE5 352 aa16.99■□□□□ 0.31
CCDC28B-201ENST00000373602 GHITMQ9H3K2 345 aa16.99■□□□□ 0.31
CCDC28B-201ENST00000373602 TRAV1-2A0A0B4J238 106 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 TMEM272A0A1B0GTI8 110 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 CCL24O00175 119 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 DENRO43583 198 aaKnown RBP16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 NDUFA3O95167 84 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 ZBTB25P24278 435 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 PSMB8P28062 276 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 CEACAM6P40199 344 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 KIR2DS1Q14954 304 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 C5orf64Q2M2E5 130 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 RPL39P5Q59GN2 51 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 HES5Q5TA89 166 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 CD200R1LQ6Q8B3 271 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 FAM131AQ6UXB0 335 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 EDARADDQ8WWZ3 215 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 ABHD14BQ96IU4 210 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 DUX3Q96PT4 197 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 C11orf54Q9H0W9 315 aaPredicted RBP16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 OR51J1Q9H342 316 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 NDUFB11Q9NX14 153 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 OR1A1Q9P1Q5 309 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 RAB22AQ9UL26 194 aa16.98■□□□□ 0.31
CCDC28B-201ENST00000373602 IGHV7-81A0A0B4J1V7 117 aa16.97■□□□□ 0.31
CCDC28B-201ENST00000373602 K7EIL1 84 aa16.97■□□□□ 0.31
CCDC28B-201ENST00000373602 PDCD5O14737 125 aa16.97■□□□□ 0.31
CCDC28B-201ENST00000373602 SCTP09683 121 aa16.97■□□□□ 0.31
CCDC28B-201ENST00000373602 HOXD3P31249 432 aaPredicted RBP16.97■□□□□ 0.31
CCDC28B-201ENST00000373602 PLA2G7Q13093 441 aa16.97■□□□□ 0.31
CCDC28B-201ENST00000373602 OR8U1Q8NH10 309 aa16.97■□□□□ 0.31
CCDC28B-201ENST00000373602 DPF1Q92782 380 aa16.97■□□□□ 0.31
CCDC28B-201ENST00000373602 PTX4Q96A99 478 aa16.97■□□□□ 0.31
CCDC28B-201ENST00000373602 KIAA1456Q9P272 454 aa16.97■□□□□ 0.31
CCDC28B-201ENST00000373602 TRDV1A0A1B0GX56 115 aa16.96■□□□□ 0.31
CCDC28B-201ENST00000373602 SHISA3A0PJX4 238 aa16.96■□□□□ 0.31
CCDC28B-201ENST00000373602 OR5H14A6NHG9 310 aa16.96■□□□□ 0.31
CCDC28B-201ENST00000373602 HSPA12AO43301 675 aa16.96■□□□□ 0.31
CCDC28B-201ENST00000373602 PPIFP30405 207 aaKnown RBP16.96■□□□□ 0.31
CCDC28B-201ENST00000373602 GABARAPL2P60520 117 aa16.96■□□□□ 0.31
CCDC28B-201ENST00000373602 DEFB136Q30KP8 78 aa16.96■□□□□ 0.31
CCDC28B-201ENST00000373602 LIN54Q6MZP7 749 aa16.96■□□□□ 0.31
CCDC28B-201ENST00000373602 GLDNQ6ZMI3 551 aaPredicted RBP16.96■□□□□ 0.31
CCDC28B-201ENST00000373602 MYOZ3Q8TDC0 251 aa16.96■□□□□ 0.31
CCDC28B-201ENST00000373602 G3V318 75 aa16.95■□□□□ 0.3
CCDC28B-201ENST00000373602 H0YJW9 148 aa16.95■□□□□ 0.3
CCDC28B-201ENST00000373602 ATP6V0E1O15342 81 aa16.95■□□□□ 0.3
CCDC28B-201ENST00000373602 MRPS14O60783 128 aaKnown RBP16.95■□□□□ 0.3
CCDC28B-201ENST00000373602 MC5RP33032 325 aa16.95■□□□□ 0.3
CCDC28B-201ENST00000373602 OR10A3P58181 314 aa16.95■□□□□ 0.3
CCDC28B-201ENST00000373602 OR5AN1Q8NGI8 311 aa16.95■□□□□ 0.3
CCDC28B-201ENST00000373602 KCNK7Q9Y2U2 307 aa16.95■□□□□ 0.3
CCDC28B-201ENST00000373602 WSB1Q9Y6I7 421 aa16.95■□□□□ 0.3
CCDC28B-201ENST00000373602 IGKV1-6A0A0C4DH72 117 aa16.94■□□□□ 0.3
CCDC28B-201ENST00000373602 WI2-2373I1.2A0A1W2PRP0 233 aa16.94■□□□□ 0.3
CCDC28B-201ENST00000373602 IFITM5A6NNB3 132 aa16.94■□□□□ 0.3
CCDC28B-201ENST00000373602 TRDCB7Z8K6 153 aa16.94■□□□□ 0.3
CCDC28B-201ENST00000373602 ATP6V1G2O95670 118 aa16.94■□□□□ 0.3
CCDC28B-201ENST00000373602 MYL9P24844 172 aa16.94■□□□□ 0.3
CCDC28B-201ENST00000373602 MOGAT2Q3SYC2 334 aa16.94■□□□□ 0.3
CCDC28B-201ENST00000373602 C4orf3Q8WVX3 66 aa16.94■□□□□ 0.3
CCDC28B-201ENST00000373602 PARP11Q9NR21 331 aa16.94■□□□□ 0.3
CCDC28B-201ENST00000373602 WASHC3Q9Y3C0 194 aa16.94■□□□□ 0.3
CCDC28B-201ENST00000373602 PROP1O75360 226 aa16.93■□□□□ 0.3
CCDC28B-201ENST00000373602 RBBP9O75884 186 aa16.93■□□□□ 0.3
CCDC28B-201ENST00000373602 IGLV1-40P01703 118 aa16.93■□□□□ 0.3
CCDC28B-201ENST00000373602 GALP22466 123 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms