RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 OR4D5Q8NGN0 318 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 CORO2AQ92828 525 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 YPEL2Q96QA6 119 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 LINC00574Q9H8X3 128 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 CBLN4Q9NTU7 201 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 GNG12Q9UBI6 72 aa11.39□□□□□ -0.59
PTPRF-202ENST00000372405 COL12A1Q99715 3063 aa11.38□□□□□ -0.59
PTPRF-202ENST00000372405 TRGV10A0A0A0MS01 117 aa11.38□□□□□ -0.59
PTPRF-202ENST00000372405 A0A0G2JRQ6 117 aa11.38□□□□□ -0.59
PTPRF-202ENST00000372405 ADAM20O43506 726 aa11.38□□□□□ -0.59
PTPRF-202ENST00000372405 RP2O75695 350 aa11.38□□□□□ -0.59
PTPRF-202ENST00000372405 LY6HO94772 140 aa11.38□□□□□ -0.59
PTPRF-202ENST00000372405 OR2F2O95006 317 aa11.38□□□□□ -0.59
PTPRF-202ENST00000372405 BRWD1-AS2P59051 145 aa11.38□□□□□ -0.59
PTPRF-202ENST00000372405 OR2F1Q13607 317 aa11.38□□□□□ -0.59
PTPRF-202ENST00000372405 EXOSC2Q13868 293 aaKnown RBP11.38□□□□□ -0.59
PTPRF-202ENST00000372405 ZNF273Q14593 569 aa11.38□□□□□ -0.59
PTPRF-202ENST00000372405 NDUFA5Q16718 116 aa11.38□□□□□ -0.59
PTPRF-202ENST00000372405 BTNL3Q6UXE8 466 aa11.38□□□□□ -0.59
PTPRF-202ENST00000372405 ZNF767PQ75MW2 155 aa11.38□□□□□ -0.59
PTPRF-202ENST00000372405 SLC7A5P1Q8MH63 180 aa11.38□□□□□ -0.59
PTPRF-202ENST00000372405 LEAP2Q969E1 77 aa11.38□□□□□ -0.59
PTPRF-202ENST00000372405 IL22RA2Q969J5 263 aa11.38□□□□□ -0.59
PTPRF-202ENST00000372405 SDHAF2Q9NX18 166 aa11.38□□□□□ -0.59
PTPRF-202ENST00000372405 A0A0D9SG52 128 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 DUXBA0A1W2PPF3 345 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 SLC31A2O15432 143 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 DEDDO75618 318 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 B3GALNT1O75752 331 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 VDAC1P21796 283 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 LINC00205P59089 165 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 MSMO1Q15800 293 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 ZBTB34Q8NCN2 500 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 KAAG1Q9UBP8 84 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 DOPEY1Q5JWR5 2465 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 DOCK11Q5JSL3 2073 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 CLEC18AA5D8T8 446 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 ZNF729A6NN14 1252 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-202ENST00000372405 K7EPK0 472 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 RAMP3O60896 148 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 SCGB1D2O95969 90 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 SERPINE2P07093 398 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 RNF224P0DH78 156 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 ZNF16P17020 682 aaPredicted RBP11.37□□□□□ -0.59
PTPRF-202ENST00000372405 C4BPBP20851 252 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 ERVFRD-1P60508 538 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 DTX2Q86UW9 622 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 FAM71E2Q8N5Q1 922 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 CLEC18CQ8NCF0 446 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 IFI27L2Q9H2X8 130 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 LIN7CQ9NUP9 197 aaKnown RBP11.37□□□□□ -0.59
PTPRF-202ENST00000372405 GFOD1Q9NXC2 390 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 LSM5Q9Y4Y9 91 aaKnown RBP11.37□□□□□ -0.59
PTPRF-202ENST00000372405 LINC00312Q9Y6C7 94 aa11.37□□□□□ -0.59
PTPRF-202ENST00000372405 SPTAN1Q13813 2472 aaKnown RBP11.37□□□□□ -0.59
PTPRF-202ENST00000372405 ZNF462Q96JM2 2506 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 LINC00473A8K010 186 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 DVL1O14640 695 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 IGKV1-5P01602 117 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 PET100P0DJ07 73 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 Q3ZCU0 254 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 C1orf229Q6ZS94 237 aaPredicted RBP11.36□□□□□ -0.59
PTPRF-202ENST00000372405 INO80EQ8NBZ0 244 aaPredicted RBP11.36□□□□□ -0.59
PTPRF-202ENST00000372405 EDARADDQ8WWZ3 215 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 PLEKHF2Q9H8W4 249 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 hADV38S2A0JD32 116 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 B8ZZF3 427 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 BCL2L11O43521 198 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 IGHV2-70P01814 119 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 HTR2BP41595 481 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 RPL31P62899 125 aaKnown RBP11.36□□□□□ -0.59
PTPRF-202ENST00000372405 IZUMO4Q1ZYL8 232 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 CT45A1Q5HYN5 189 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 PRAMEF5Q5TYX0 476 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 TMEM200BQ69YZ2 307 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 Q6ZRM9 215 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 ZNF439Q8NDP4 499 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 CT45A3Q8NHU0 189 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 AQP10Q96PS8 301 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 IDI2-AS1Q9NZ38 188 aa11.36□□□□□ -0.59
PTPRF-202ENST00000372405 RCL1Q9Y2P8 373 aaKnown RBP11.36□□□□□ -0.59
PTPRF-202ENST00000372405 MYO18BQ8IUG5 2567 aa11.35□□□□□ -0.59
PTPRF-202ENST00000372405 A0A1W2PPE3 182 aa11.35□□□□□ -0.59
PTPRF-202ENST00000372405 C17orf98A8MV24 154 aa11.35□□□□□ -0.59
PTPRF-202ENST00000372405 NDUFB3O43676 98 aa11.35□□□□□ -0.59
PTPRF-202ENST00000372405 CCL3L1P16619 93 aa11.35□□□□□ -0.59
PTPRF-202ENST00000372405 MEF2CQ06413 473 aaPredicted RBP11.35□□□□□ -0.59
PTPRF-202ENST00000372405 OR2B11Q5JQS5 317 aa11.35□□□□□ -0.59
PTPRF-202ENST00000372405 DMBX1Q8NFW5 382 aa11.35□□□□□ -0.59
PTPRF-202ENST00000372405 GPR146Q96CH1 333 aa11.35□□□□□ -0.59
PTPRF-202ENST00000372405 RAB1BQ9H0U4 201 aa11.35□□□□□ -0.59
PTPRF-202ENST00000372405 C11orf1Q9H5F2 150 aa11.35□□□□□ -0.59
PTPRF-202ENST00000372405 LAMP3Q9UQV4 416 aa11.35□□□□□ -0.59
PTPRF-202ENST00000372405 RNF212BA8MTL3 300 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 C1QL1O75973 258 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 FSTL3O95633 263 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 HKR1P10072 659 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 GPR12P47775 334 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 ESCO2Q56NI9 601 aa11.34□□□□□ -0.59
PTPRF-202ENST00000372405 RPL39P5Q59GN2 51 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms