RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 PIPOXQ9P0Z9 390 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 POLR3KQ9Y2Y1 108 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 TMEM56-RWDD3S4R434 201 aa12.25□□□□□ -0.45
CCDC88C-202ENST00000334448 PPIAL4CA0A0B4J2A2 164 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 DUXBA0A1W2PPF3 345 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 MEX3AA1L020 520 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 M0R1W7 72 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 HSD17B6O14756 317 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 LIPFP07098 398 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 OR5AC1P0C628 307 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 PPIAL4GP0DN37 164 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 OMGP23515 440 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 COL8A1P27658 744 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 RAP2BP61225 183 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 CD83Q01151 205 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 SLC9A3R2Q15599 337 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 C2orf68Q2NKX9 166 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 CT45A1Q5HYN5 189 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 MALRD1Q5VYJ5 2156 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 CLEC2AQ6UVW9 174 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 C1orf122Q6ZSJ8 110 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 LRRC75A-AS1Q8N1F1 130 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 CT45A3Q8NHU0 189 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 CASTOR1Q8WTX7 329 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 FAM168AQ92567 244 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 TNFRSF14Q92956 283 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 MBD6Q96DN6 1003 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 SPG11Q96JI7 2443 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 LIN7CQ9NUP9 197 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 PSG11Q9UQ72 335 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 RBM7Q9Y580 266 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 SESN1Q9Y6P5 492 aa12.24□□□□□ -0.45
CCDC88C-202ENST00000334448 ST8SIA5O15466 376 aa12.23□□□□□ -0.45
CCDC88C-202ENST00000334448 CDS2O95674 445 aa12.23□□□□□ -0.45
CCDC88C-202ENST00000334448 IGHV1-8P0DP01 117 aa12.23□□□□□ -0.45
CCDC88C-202ENST00000334448 ZNF134P52741 427 aa12.23□□□□□ -0.45
CCDC88C-202ENST00000334448 H2BFSP57053 126 aa12.23□□□□□ -0.45
CCDC88C-202ENST00000334448 PAX2Q02962 417 aa12.23□□□□□ -0.45
CCDC88C-202ENST00000334448 FAM71F2Q6NXP2 309 aa12.23□□□□□ -0.45
CCDC88C-202ENST00000334448 LGI3Q8N145 548 aa12.23□□□□□ -0.45
CCDC88C-202ENST00000334448 CLDND2Q8NHS1 167 aa12.23□□□□□ -0.45
CCDC88C-202ENST00000334448 MARVELD3Q96A59 401 aa12.23□□□□□ -0.45
CCDC88C-202ENST00000334448 FYTTD1Q96QD9 318 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-202ENST00000334448 TP53RKQ96S44 253 aa12.23□□□□□ -0.45
CCDC88C-202ENST00000334448 HSD17B10Q99714 261 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-202ENST00000334448 UNKLQ9H9P5 680 aaKnown RBP12.23□□□□□ -0.45
CCDC88C-202ENST00000334448 SDHAF2Q9NX18 166 aa12.23□□□□□ -0.45
CCDC88C-202ENST00000334448 KCNS2Q9ULS6 477 aa12.23□□□□□ -0.45
CCDC88C-202ENST00000334448 TACC2O95359 2948 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 KIAA2026Q5HYC2 2103 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 LOC105371242A0A075B767 164 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 hCG_1809904A0A1W2PP81 198 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 A0A1W2PPE2 198 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 A0A1W2PR64 198 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 A0A1W2PRV1 198 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 GOSR2O14653 212 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 SLC31A2O15432 143 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 PROP1O75360 226 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 HNRNPCP07910 306 aaKnown RBP eCLIP12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 GPR12P47775 334 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 ZNF137PP52743 207 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 LTC4SQ16873 150 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 UTF1Q5T230 341 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 LIN54Q6MZP7 749 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 C18orf12Q96KH6 178 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 ZNF251Q9BRH9 671 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 TMEM133Q9H2Q1 129 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 CENPEQ02224 2701 aa12.22□□□□□ -0.45
CCDC88C-202ENST00000334448 A8MV72 311 aaPredicted RBP12.21□□□□□ -0.45
CCDC88C-202ENST00000334448 RAB29O14966 203 aa12.21□□□□□ -0.45
CCDC88C-202ENST00000334448 PHF1O43189 567 aaPredicted RBP12.21□□□□□ -0.45
CCDC88C-202ENST00000334448 RBFOX2O43251 390 aaKnown RBP eCLIP12.21□□□□□ -0.45
CCDC88C-202ENST00000334448 ENSAO43768 121 aaKnown RBP12.21□□□□□ -0.45
CCDC88C-202ENST00000334448 C1QBP02746 253 aa12.21□□□□□ -0.45
CCDC88C-202ENST00000334448 RPA2P15927 270 aa12.21□□□□□ -0.45
CCDC88C-202ENST00000334448 NFYBP25208 207 aa12.21□□□□□ -0.45
CCDC88C-202ENST00000334448 KRTAP10-9P60411 292 aa12.21□□□□□ -0.45
CCDC88C-202ENST00000334448 CATR1Q13166 79 aa12.21□□□□□ -0.45
CCDC88C-202ENST00000334448 DCAF12L2Q5VW00 463 aa12.21□□□□□ -0.45
CCDC88C-202ENST00000334448 ODF3L1Q8IXM7 274 aa12.21□□□□□ -0.45
CCDC88C-202ENST00000334448 OR9G1Q8NH87 305 aa12.21□□□□□ -0.45
CCDC88C-202ENST00000334448 LHFPL5Q8TAF8 219 aa12.21□□□□□ -0.45
CCDC88C-202ENST00000334448 ABHD14BQ96IU4 210 aa12.21□□□□□ -0.45
CCDC88C-202ENST00000334448 NAV2Q8IVL1 2488 aa12.2□□□□□ -0.46
CCDC88C-202ENST00000334448 G3V3Q6 166 aa12.2□□□□□ -0.46
CCDC88C-202ENST00000334448 BOLA2-SMG1P6H3BVE0 249 aa12.2□□□□□ -0.46
CCDC88C-202ENST00000334448 FOXH1O75593 365 aa12.2□□□□□ -0.46
CCDC88C-202ENST00000334448 SLC25A16P16260 332 aa12.2□□□□□ -0.46
CCDC88C-202ENST00000334448 DUTP33316 252 aaKnown RBP12.2□□□□□ -0.46
CCDC88C-202ENST00000334448 SP6Q3SY56 376 aa12.2□□□□□ -0.46
CCDC88C-202ENST00000334448 ZNF833PQ6ZTB9 187 aa12.2□□□□□ -0.46
CCDC88C-202ENST00000334448 UXS1Q8NBZ7 420 aa12.2□□□□□ -0.46
CCDC88C-202ENST00000334448 NRGNQ92686 78 aa12.2□□□□□ -0.46
CCDC88C-202ENST00000334448 PERPQ96FX8 193 aa12.2□□□□□ -0.46
CCDC88C-202ENST00000334448 ADTRPQ96IZ2 230 aa12.2□□□□□ -0.46
CCDC88C-202ENST00000334448 RNF150Q9ULK6 438 aa12.2□□□□□ -0.46
CCDC88C-202ENST00000334448 TMED3Q9Y3Q3 217 aa12.2□□□□□ -0.46
CCDC88C-202ENST00000334448 KPTNQ9Y664 436 aa12.2□□□□□ -0.46
CCDC88C-202ENST00000334448 IGHV4-30-2A0A087WSY4 118 aa12.19□□□□□ -0.46
CCDC88C-202ENST00000334448 SAA2-SAA4A0A096LPE2 208 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms